Analysis of interatomic Contacts of Structural Units in PDB entry:
3OMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OMZ entry

There are 4 chains in PDB entry 3OMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11PRO 250
C
 SER 11PRO 250
E
 ILE 13LYS 242
G
 VAL 12GLY 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3OMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 91Right-handed 310
Helix 2
2
A
203 207Right-handed 310
Helix 3
3
A
217 221Right-handed 310
Helix 4
4
C
87 91Right-handed 310
Helix 5
5
C
217 221Right-handed 310
Helix 6
6
E
87 91Right-handed 310
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There are 24 sheets in PDB entry 3OMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
112 117parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
112 117parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
106 108anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
69 72anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
159 161anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
244 249parallel
Strand 3
A
223 229anti-parallel
Strand 4
A
168 174anti-parallel
Strand 5
A
180 187anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
244 249parallel
Strand 3
A
223 229anti-parallel
Strand 4
A
239 240anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
211 213anti-parallel
Strand 3
A
198 200anti-parallel
Strand 4
A
194 195anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
112 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 52anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
112 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
106 108anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 23first strand
Strand 2
C
80 83anti-parallel
Strand 3
C
69 70anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 140first strand
Strand 2
C
159 161anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 149first strand
Strand 2
C
244 249parallel
Strand 3
C
223 229anti-parallel
Strand 4
C
168 174anti-parallel
Strand 5
C
180 187anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 149first strand
Strand 2
C
244 249parallel
Strand 3
C
223 229anti-parallel
Strand 4
C
239 240anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 156first strand
Strand 2
C
211 213anti-parallel
Strand 3
C
198 200anti-parallel
Strand 4
C
194 195anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 23first strand
Strand 2
E
80 83anti-parallel
Strand 3
E
69 70anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
46 52anti-parallel
Strand 3
E
33 39anti-parallel
Strand 4
E
92 99anti-parallel
Strand 5
E
106 108anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
46 52anti-parallel
Strand 3
E
33 39anti-parallel
Strand 4
E
92 99anti-parallel
Strand 5
E
112 114anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
138 140first strand
Strand 2
E
159 161anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 187first strand
Strand 2
E
168 173anti-parallel
Strand 3
E
224 229anti-parallel
Strand 4
E
238 240anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
194 195first strand
Strand 2
E
198 203anti-parallel
Strand 3
E
208 212anti-parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
57 60first strand
Strand 2
G
46 52anti-parallel
Strand 3
G
33 39anti-parallel
Strand 4
G
92 99anti-parallel
Strand 5
G
106 108anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
57 60first strand
Strand 2
G
46 52anti-parallel
Strand 3
G
33 39anti-parallel
Strand 4
G
92 99anti-parallel
Strand 5
G
112 114anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
69 71first strand
Strand 2
G
81 83anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
168 169first strand
Strand 2
G
228 229anti-parallel
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