Analysis of interatomic Contacts of Structural Units in PDB entry:
3ONM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ONM entry

There are 2 chains in PDB entry 3ONM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 99GLN 289
B
 SER 100ILE 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3ONM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 111Right-handed alpha
Helix 2
2
A
112 125Right-handed alpha
Helix 3
3
A
136 146Right-handed alpha
Helix 4
4
A
196 209Right-handed alpha
Helix 5
5
A
221 231Right-handed alpha
Helix 6
6
A
241 243Right-handed 310
Helix 7
7
A
251 255Right-handed 310
Helix 8
8
A
274 286Right-handed alpha
Helix 9
9
B
107 111Right-handed alpha
Helix 10
10
B
113 122Right-handed alpha
Helix 11
11
B
136 138Right-handed 310
Helix 12
12
B
139 146Right-handed alpha
Helix 13
13
B
196 209Right-handed alpha
Helix 14
14
B
221 231Right-handed alpha
Helix 15
15
B
241 243Right-handed 310
Helix 16
16
B
251 255Right-handed 310
Helix 17
17
B
273 280Right-handed alpha
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There are 6 sheets in PDB entry 3ONM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
101 105parallel
Strand 3
A
151 154parallel
Strand 4
A
262 267anti-parallel
Strand 5
A
163 169anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
171 176anti-parallel
Strand 3
A
247 250anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
213 219parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
102 106parallel
Strand 3
B
151 154parallel
Strand 4
B
262 268anti-parallel
Strand 5
B
163 169anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 239first strand
Strand 2
B
171 176anti-parallel
Strand 3
B
247 250anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
213 219parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il