Analysis of interatomic Contacts of Structural Units in PDB entry:
3OO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OO2 entry

There are 2 chains in PDB entry 3OO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 382
B
 SER 2LYS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3OO2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
66 75Right-handed alpha
Helix 5
5
A
89 91Right-handed 310
Helix 6
6
A
92 99Right-handed alpha
Helix 7
7
A
107 117Right-handed alpha
Helix 8
8
A
143 155Right-handed alpha
Helix 9
9
A
177 192Right-handed alpha
Helix 10
10
A
203 210Right-handed alpha
Helix 11
11
A
221 226Right-handed 310
Helix 12
12
A
230 237Right-handed alpha
Helix 13
13
A
283 287Right-handed 310
Helix 14
14
A
289 293Right-handed 310
Helix 15
15
A
341 349Right-handed alpha
Helix 16
16
A
352 360Right-handed alpha
Helix 17
17
A
378 382Right-handed 310
Helix 18
18
B
15 29Right-handed alpha
Helix 19
19
B
38 44Right-handed alpha
Helix 20
20
B
46 56Right-handed alpha
Helix 21
21
B
66 76Right-handed alpha
Helix 22
22
B
89 91Right-handed 310
Helix 23
23
B
92 99Right-handed alpha
Helix 24
24
B
107 115Right-handed alpha
Helix 25
25
B
143 157Right-handed alpha
Helix 26
26
B
177 191Right-handed alpha
Helix 27
27
B
203 210Right-handed alpha
Helix 28
28
B
221 226Right-handed 310
Helix 29
29
B
230 235Right-handed alpha
Helix 30
30
B
283 287Right-handed 310
Helix 31
31
B
289 293Right-handed 310
Helix 32
32
B
341 349Right-handed alpha
Helix 33
33
B
352 360Right-handed alpha
Helix 34
34
B
378 382Right-handed 310
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There are 5 sheets in PDB entry 3OO2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
275 280anti-parallel
Strand 3
A
315 319anti-parallel
Strand 4
A
302 307anti-parallel
Strand 5
A
296 299anti-parallel
Strand 6
A
328 332anti-parallel
Strand 7
A
245 250anti-parallel
Strand 8
A
9 14anti-parallel
Strand 9
A
366 370parallel
Strand 10
A
373 377anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
61 64parallel
Strand 3
A
81 84parallel
Strand 4
A
101 105parallel
Strand 5
A
126 131parallel
Strand 6
A
160 166parallel
Strand 7
A
198 202parallel
Strand 8
A
217 218parallel
Strand 9
A
33 37parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 257first strand
Strand 2
B
275 280anti-parallel
Strand 3
B
315 319anti-parallel
Strand 4
B
302 307anti-parallel
Strand 5
B
296 299anti-parallel
Strand 6
B
328 332anti-parallel
Strand 7
B
245 250anti-parallel
Strand 8
B
9 14anti-parallel
Strand 9
B
366 369parallel
Strand 10
B
374 377anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
217 218parallel
Strand 3
B
198 202parallel
Strand 4
B
160 166parallel
Strand 5
B
126 131parallel
Strand 6
B
103 105parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
61 64parallel
Strand 3
B
81 84parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il