Analysis of interatomic Contacts of Structural Units in PDB entry:
3OO3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OO3 entry

There is 1 chain in PDB entry 3OO3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3TRP 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3OO3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 7Right-handed 310
Helix 2
2
A
15 24Right-handed alpha
Helix 3
3
A
46 56Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
85 95Right-handed alpha
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
99 124Right-handed alpha
Helix 8
8
A
130 134Right-handed alpha
Helix 9
9
A
136 148Right-handed alpha
Helix 10
10
A
150 152Right-handed 310
Helix 11
11
A
153 167Right-handed alpha
Helix 12
12
A
169 194Right-handed alpha
Helix 13
13
A
198 208Right-handed alpha
Helix 14
14
A
209 211Right-handed 310
Helix 15
15
A
212 244Right-handed alpha
Helix 16
16
A
245 255Right-handed alpha
Helix 17
17
A
258 271Right-handed alpha
Helix 18
18
A
301 307Right-handed alpha
Helix 19
19
A
334 353Right-handed alpha
Helix 20
20
A
361 365Right-handed 310
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There are 5 sheets in PDB entry 3OO3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
13 14anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
41 44anti-parallel
Strand 3
A
297 300parallel
Strand 4
A
279 281anti-parallel
Strand 5
A
60 61anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
381 383anti-parallel
Strand 3
A
357 358anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
290 292anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 368first strand
Strand 2
A
376 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il