Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OOA entry

There are 2 chains in PDB entry 3OOA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 10ARG 404
B
 MET 10ARG 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3OOA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
27 46Right-handed alpha
Helix 3
3
A
55 62Right-handed alpha
Helix 4
4
A
62 69Right-handed alpha
Helix 5
5
A
80 89Right-handed alpha
Helix 6
6
A
95 103Right-handed alpha
Helix 7
7
A
104 106Right-handed 310
Helix 8
8
A
107 114Right-handed alpha
Helix 9
9
A
137 144Right-handed alpha
Helix 10
10
A
150 164Right-handed alpha
Helix 11
11
A
179 191Right-handed alpha
Helix 12
12
A
192 201Right-handed alpha
Helix 13
13
A
208 222Right-handed alpha
Helix 14
14
A
223 225Right-handed 310
Helix 15
15
A
228 232Right-handed 310
Helix 16
16
A
233 243Right-handed alpha
Helix 17
17
A
253 260Right-handed alpha
Helix 18
18
A
264 266Right-handed 310
Helix 19
19
A
300 312Right-handed alpha
Helix 20
20
A
313 321Right-handed alpha
Helix 21
21
A
322 324Right-handed 310
Helix 22
22
A
340 352Right-handed alpha
Helix 23
23
A
359 364Right-handed alpha
Helix 24
24
A
365 382Right-handed alpha
Helix 25
25
A
384 404Right-handed alpha
Helix 26
26
B
11 15Right-handed 310
Helix 27
27
B
27 46Right-handed alpha
Helix 28
28
B
55 62Right-handed alpha
Helix 29
29
B
62 69Right-handed alpha
Helix 30
30
B
80 89Right-handed alpha
Helix 31
31
B
95 103Right-handed alpha
Helix 32
32
B
104 106Right-handed 310
Helix 33
33
B
107 115Right-handed alpha
Helix 34
34
B
137 144Right-handed alpha
Helix 35
35
B
150 164Right-handed alpha
Helix 36
36
B
179 191Right-handed alpha
Helix 37
37
B
192 201Right-handed alpha
Helix 38
38
B
208 222Right-handed alpha
Helix 39
39
B
223 225Right-handed 310
Helix 40
40
B
228 232Right-handed 310
Helix 41
41
B
233 243Right-handed alpha
Helix 42
42
B
253 260Right-handed alpha
Helix 43
43
B
264 266Right-handed 310
Helix 44
44
B
300 312Right-handed alpha
Helix 45
45
B
313 321Right-handed alpha
Helix 46
46
B
322 324Right-handed 310
Helix 47
47
B
340 352Right-handed alpha
Helix 48
48
B
359 364Right-handed alpha
Helix 49
49
B
365 382Right-handed alpha
Helix 50
50
B
384 403Right-handed alpha
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There are 6 sheets in PDB entry 3OOA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
19 23parallel
Strand 3
A
74 78parallel
Strand 4
A
290 293anti-parallel
Strand 5
A
123 128anti-parallel
Strand 6
A
328 329anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
246 252parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
268 271anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
355 357parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
19 23parallel
Strand 3
B
74 78parallel
Strand 4
B
290 293anti-parallel
Strand 5
B
123 128anti-parallel
Strand 6
B
328 329anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 170first strand
Strand 2
B
246 252parallel
Strand 3
B
131 136anti-parallel
Strand 4
B
268 271anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
355 357parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il