Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OOC entry

There are 2 chains in PDB entry 3OOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 89ILE 385
B
 THR 89ILE 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3OOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
155 171Right-handed alpha
Helix 2
2
A
176 187Right-handed alpha
Helix 3
3
A
191 196Right-handed alpha
Helix 4
4
A
197 202Right-handed alpha
Helix 5
5
A
252 256Right-handed alpha
Helix 6
6
A
260 262Right-handed 310
Helix 7
7
A
330 332Right-handed 310
Helix 8
8
B
157 171Right-handed alpha
Helix 9
9
B
177 189Right-handed alpha
Helix 10
10
B
191 201Right-handed alpha
Helix 11
11
B
253 258Right-handed 310
Helix 12
12
B
330 332Right-handed 310
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There are 12 sheets in PDB entry 3OOC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
376 377anti-parallel
Strand 3
A
340 344anti-parallel
Strand 4
A
350 354anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
324 328anti-parallel
Strand 3
A
364 369anti-parallel
Strand 4
A
356 361anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
312 319anti-parallel
Strand 3
A
264 267anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
312 319anti-parallel
Strand 3
A
110 113anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
293 301anti-parallel
Strand 6
A
278 288anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
234 239anti-parallel
Strand 3
A
216 218anti-parallel
Strand 4
A
143 144anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
130 133anti-parallel
Strand 4
A
228 229anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
376 378anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
364 369anti-parallel
Strand 4
B
356 361anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
312 319anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
243 251anti-parallel
Strand 5
B
293 301anti-parallel
Strand 6
B
282 288anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
234 239anti-parallel
Strand 3
B
216 218anti-parallel
Strand 4
B
143 144anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 211first strand
Strand 2
B
150 154anti-parallel
Strand 3
B
130 133anti-parallel
Strand 4
B
228 229anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 334first strand
Strand 2
B
339 342anti-parallel
Strand 3
B
352 354anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il