Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OOQ entry

There are 4 chains in PDB entry 3OOQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	GLU 389
B	LYS 6	ARG 388
C	LYS 6	GLU 389
D	LYS 6	LYS 145

There are170 helices in PDB entry 3OOQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	74	78	Right-handed 310
Helix 2	2	A	92	97	Right-handed 310
Helix 3	3	A	102	109	Right-handed alpha
Helix 4	4	A	138	142	Right-handed alpha
Helix 5	5	A	155	165	Right-handed alpha
Helix 6	6	A	171	199	Right-handed alpha
Helix 7	7	A	207	218	Right-handed alpha
Helix 8	8	A	229	244	Right-handed alpha
Helix 9	9	A	254	257	Right-handed 310
Helix 10	10	A	258	266	Right-handed alpha
Helix 11	11	A	280	284	Right-handed 310
Helix 12	12	A	289	297	Right-handed alpha
Helix 13	13	A	311	313	Right-handed 310
Helix 14	14	A	314	322	Right-handed alpha
Helix 15	15	A	323	326	Right-handed 310
Helix 16	16	A	328	335	Right-handed alpha
Helix 17	17	A	337	344	Right-handed alpha
Helix 18	18	B	74	78	Right-handed 310
Helix 19	19	B	92	97	Right-handed 310
Helix 20	20	B	102	110	Right-handed alpha
Helix 21	21	B	138	142	Right-handed alpha
Helix 22	22	B	155	165	Right-handed alpha
Helix 23	23	B	171	199	Right-handed alpha
Helix 24	24	B	207	218	Right-handed alpha
Helix 25	25	B	229	244	Right-handed alpha
Helix 26	26	B	254	257	Right-handed 310
Helix 27	27	B	258	266	Right-handed alpha
Helix 28	28	B	280	284	Right-handed 310
Helix 29	29	B	289	297	Right-handed alpha
Helix 30	30	B	311	313	Right-handed 310
Helix 31	31	B	314	322	Right-handed alpha
Helix 32	32	B	323	326	Right-handed 310
Helix 33	33	B	328	335	Right-handed alpha
Helix 34	34	B	337	344	Right-handed alpha
Helix 35	35	C	74	78	Right-handed 310
Helix 36	36	C	92	97	Right-handed 310
Helix 37	37	C	102	110	Right-handed alpha
Helix 38	38	C	138	142	Right-handed alpha
Helix 39	39	C	155	165	Right-handed alpha
Helix 40	40	C	171	199	Right-handed alpha
Helix 41	41	C	207	218	Right-handed alpha
Helix 42	42	C	229	244	Right-handed alpha
Helix 43	43	C	254	257	Right-handed 310
Helix 44	44	C	258	265	Right-handed alpha
Helix 45	45	C	280	284	Right-handed 310
Helix 46	46	C	289	297	Right-handed alpha
Helix 47	47	C	311	313	Right-handed 310
Helix 48	48	C	314	322	Right-handed alpha
Helix 49	49	C	323	326	Right-handed 310
Helix 50	50	C	328	335	Right-handed alpha
Helix 51	51	C	337	344	Right-handed alpha
Helix 52	52	D	74	78	Right-handed 310
Helix 53	53	D	92	96	Right-handed 310
Helix 54	54	D	102	109	Right-handed alpha
Helix 55	55	D	138	142	Right-handed alpha
Helix 56	56	D	155	165	Right-handed alpha
Helix 57	57	D	171	199	Right-handed alpha
Helix 58	58	D	207	218	Right-handed alpha
Helix 59	59	D	229	244	Right-handed alpha
Helix 60	60	D	254	257	Right-handed 310
Helix 61	61	D	258	266	Right-handed alpha
Helix 62	62	D	280	284	Right-handed 310
Helix 63	63	D	289	297	Right-handed alpha
Helix 64	64	D	311	313	Right-handed 310
Helix 65	65	D	314	322	Right-handed alpha
Helix 66	66	D	323	326	Right-handed 310
Helix 67	67	D	328	335	Right-handed alpha
Helix 68	68	D	337	344	Right-handed alpha
Helix 69	69	E	74	78	Right-handed 310
Helix 70	70	E	92	97	Right-handed 310
Helix 71	71	E	101	109	Right-handed alpha
Helix 72	72	E	138	142	Right-handed alpha
Helix 73	73	E	155	165	Right-handed alpha
Helix 74	74	E	171	199	Right-handed alpha
Helix 75	75	E	207	218	Right-handed alpha
Helix 76	76	E	229	244	Right-handed alpha
Helix 77	77	E	254	257	Right-handed 310
Helix 78	78	E	258	266	Right-handed alpha
Helix 79	79	E	280	284	Right-handed 310
Helix 80	80	E	289	297	Right-handed alpha
Helix 81	81	E	311	313	Right-handed 310
Helix 82	82	E	314	322	Right-handed alpha
Helix 83	83	E	323	326	Right-handed 310
Helix 84	84	E	328	335	Right-handed alpha
Helix 85	85	E	337	344	Right-handed alpha
Helix 86	86	F	74	78	Right-handed 310
Helix 87	87	F	92	97	Right-handed 310
Helix 88	88	F	102	109	Right-handed alpha
Helix 89	89	F	138	142	Right-handed alpha
Helix 90	90	F	155	165	Right-handed alpha
Helix 91	91	F	171	199	Right-handed alpha
Helix 92	92	F	207	218	Right-handed alpha
Helix 93	93	F	229	244	Right-handed alpha
Helix 94	94	F	254	257	Right-handed 310
Helix 95	95	F	258	265	Right-handed alpha
Helix 96	96	F	280	284	Right-handed 310
Helix 97	97	F	289	298	Right-handed alpha
Helix 98	98	F	311	313	Right-handed 310
Helix 99	99	F	314	322	Right-handed alpha
Helix 100	100	F	323	326	Right-handed 310
Helix 101	101	F	328	335	Right-handed alpha
Helix 102	102	F	337	344	Right-handed alpha
Helix 103	103	G	74	78	Right-handed 310
Helix 104	104	G	92	97	Right-handed 310
Helix 105	105	G	102	109	Right-handed alpha
Helix 106	106	G	138	142	Right-handed alpha
Helix 107	107	G	155	165	Right-handed alpha
Helix 108	108	G	171	199	Right-handed alpha
Helix 109	109	G	207	218	Right-handed alpha
Helix 110	110	G	229	244	Right-handed alpha
Helix 111	111	G	254	257	Right-handed 310
Helix 112	112	G	258	265	Right-handed alpha
Helix 113	113	G	280	284	Right-handed 310
Helix 114	114	G	289	297	Right-handed alpha
Helix 115	115	G	311	313	Right-handed 310
Helix 116	116	G	314	322	Right-handed alpha
Helix 117	117	G	323	326	Right-handed 310
Helix 118	118	G	328	335	Right-handed alpha
Helix 119	119	G	337	344	Right-handed alpha
Helix 120	120	H	74	78	Right-handed 310
Helix 121	121	H	92	97	Right-handed 310
Helix 122	122	H	102	110	Right-handed alpha
Helix 123	123	H	138	142	Right-handed alpha
Helix 124	124	H	155	165	Right-handed alpha
Helix 125	125	H	171	199	Right-handed alpha
Helix 126	126	H	207	218	Right-handed alpha
Helix 127	127	H	229	244	Right-handed alpha
Helix 128	128	H	254	257	Right-handed 310
Helix 129	129	H	258	266	Right-handed alpha
Helix 130	130	H	280	284	Right-handed 310
Helix 131	131	H	289	297	Right-handed alpha
Helix 132	132	H	311	313	Right-handed 310
Helix 133	133	H	314	322	Right-handed alpha
Helix 134	134	H	323	326	Right-handed 310
Helix 135	135	H	328	335	Right-handed alpha
Helix 136	136	H	337	344	Right-handed alpha
Helix 137	137	I	74	78	Right-handed 310
Helix 138	138	I	92	97	Right-handed 310
Helix 139	139	I	102	109	Right-handed alpha
Helix 140	140	I	138	142	Right-handed alpha
Helix 141	141	I	155	165	Right-handed alpha
Helix 142	142	I	171	199	Right-handed alpha
Helix 143	143	I	207	218	Right-handed alpha
Helix 144	144	I	229	244	Right-handed alpha
Helix 145	145	I	254	257	Right-handed 310
Helix 146	146	I	258	266	Right-handed alpha
Helix 147	147	I	280	284	Right-handed 310
Helix 148	148	I	289	297	Right-handed alpha
Helix 149	149	I	311	313	Right-handed 310
Helix 150	150	I	314	322	Right-handed alpha
Helix 151	151	I	323	326	Right-handed 310
Helix 152	152	I	328	335	Right-handed alpha
Helix 153	153	I	337	344	Right-handed alpha
Helix 154	154	J	74	78	Right-handed 310
Helix 155	155	J	92	97	Right-handed 310
Helix 156	156	J	101	109	Right-handed alpha
Helix 157	157	J	138	142	Right-handed alpha
Helix 158	158	J	155	165	Right-handed alpha
Helix 159	159	J	171	199	Right-handed alpha
Helix 160	160	J	207	218	Right-handed alpha
Helix 161	161	J	229	244	Right-handed alpha
Helix 162	162	J	254	257	Right-handed 310
Helix 163	163	J	258	265	Right-handed alpha
Helix 164	164	J	280	284	Right-handed 310
Helix 165	165	J	289	297	Right-handed alpha
Helix 166	166	J	311	313	Right-handed 310
Helix 167	167	J	314	322	Right-handed alpha
Helix 168	168	J	323	326	Right-handed 310
Helix 169	169	J	328	335	Right-handed alpha
Helix 170	170	J	337	344	Right-handed alpha

There are 30 sheets in PDB entry 3OOQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	37	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	7	14	anti-parallel
Strand 4	A	46	49	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	37	first strand
Strand 2	A	22	29	anti-parallel
Strand 3	A	7	14	anti-parallel
Strand 4	A	54	57	parallel
Strand 5	A	361	364	anti-parallel
Strand 6	A	375	380	anti-parallel
Strand 7	A	383	387	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	112	117	parallel
Strand 3	A	125	133	anti-parallel
Strand 4	A	143	153	anti-parallel
Strand 5	A	223	227	parallel
Strand 6	A	247	251	parallel
Strand 7	A	269	271	parallel
Strand 8	A	301	303	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	7	14	anti-parallel
Strand 4	B	46	49	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	22	29	anti-parallel
Strand 3	B	7	14	anti-parallel
Strand 4	B	54	57	parallel
Strand 5	B	361	364	anti-parallel
Strand 6	B	375	380	anti-parallel
Strand 7	B	383	387	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	112	117	parallel
Strand 3	B	125	133	anti-parallel
Strand 4	B	143	153	anti-parallel
Strand 5	B	223	227	parallel
Strand 6	B	247	251	parallel
Strand 7	B	269	271	parallel
Strand 8	B	301	303	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	7	14	anti-parallel
Strand 4	C	46	49	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	22	29	anti-parallel
Strand 3	C	7	14	anti-parallel
Strand 4	C	54	57	parallel
Strand 5	C	361	364	anti-parallel
Strand 6	C	375	380	anti-parallel
Strand 7	C	383	387	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	64	first strand
Strand 2	C	112	117	parallel
Strand 3	C	125	133	anti-parallel
Strand 4	C	143	153	anti-parallel
Strand 5	C	223	227	parallel
Strand 6	C	247	251	parallel
Strand 7	C	269	271	parallel
Strand 8	C	301	303	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	7	14	anti-parallel
Strand 4	D	46	49	parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	22	29	anti-parallel
Strand 3	D	7	14	anti-parallel
Strand 4	D	54	57	parallel
Strand 5	D	361	364	anti-parallel
Strand 6	D	375	380	anti-parallel
Strand 7	D	383	387	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	112	117	parallel
Strand 3	D	125	133	anti-parallel
Strand 4	D	143	153	anti-parallel
Strand 5	D	223	227	parallel
Strand 6	D	247	251	parallel
Strand 7	D	269	271	parallel
Strand 8	D	301	303	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	22	29	anti-parallel
Strand 3	E	7	14	anti-parallel
Strand 4	E	46	49	parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	37	first strand
Strand 2	E	22	29	anti-parallel
Strand 3	E	7	14	anti-parallel
Strand 4	E	54	57	parallel
Strand 5	E	361	364	anti-parallel
Strand 6	E	375	380	anti-parallel
Strand 7	E	383	387	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	64	first strand
Strand 2	E	112	117	parallel
Strand 3	E	125	133	anti-parallel
Strand 4	E	143	153	anti-parallel
Strand 5	E	223	227	parallel
Strand 6	E	247	251	parallel
Strand 7	E	269	271	parallel
Strand 8	E	301	303	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	37	first strand
Strand 2	F	22	29	anti-parallel
Strand 3	F	7	14	anti-parallel
Strand 4	F	46	49	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	37	first strand
Strand 2	F	22	29	anti-parallel
Strand 3	F	7	14	anti-parallel
Strand 4	F	54	57	parallel
Strand 5	F	361	364	anti-parallel
Strand 6	F	375	380	anti-parallel
Strand 7	F	383	387	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	64	first strand
Strand 2	F	112	117	parallel
Strand 3	F	125	133	anti-parallel
Strand 4	F	143	153	anti-parallel
Strand 5	F	223	227	parallel
Strand 6	F	247	251	parallel
Strand 7	F	269	271	parallel
Strand 8	F	301	303	parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	37	first strand
Strand 2	G	22	29	anti-parallel
Strand 3	G	7	14	anti-parallel
Strand 4	G	46	49	parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	37	first strand
Strand 2	G	22	29	anti-parallel
Strand 3	G	7	14	anti-parallel
Strand 4	G	54	57	parallel
Strand 5	G	361	364	anti-parallel
Strand 6	G	375	380	anti-parallel
Strand 7	G	383	387	anti-parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	64	first strand
Strand 2	G	112	117	parallel
Strand 3	G	125	133	anti-parallel
Strand 4	G	143	153	anti-parallel
Strand 5	G	223	227	parallel
Strand 6	G	247	251	parallel
Strand 7	G	269	271	parallel
Strand 8	G	301	303	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	37	first strand
Strand 2	H	22	29	anti-parallel
Strand 3	H	7	14	anti-parallel
Strand 4	H	46	49	parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	37	first strand
Strand 2	H	22	29	anti-parallel
Strand 3	H	7	14	anti-parallel
Strand 4	H	54	57	parallel
Strand 5	H	361	364	anti-parallel
Strand 6	H	375	380	anti-parallel
Strand 7	H	383	387	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	64	first strand
Strand 2	H	112	117	parallel
Strand 3	H	125	133	anti-parallel
Strand 4	H	143	153	anti-parallel
Strand 5	H	223	227	parallel
Strand 6	H	247	251	parallel
Strand 7	H	269	271	parallel
Strand 8	H	301	303	parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	37	first strand
Strand 2	I	22	29	anti-parallel
Strand 3	I	7	14	anti-parallel
Strand 4	I	46	49	parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	37	first strand
Strand 2	I	22	29	anti-parallel
Strand 3	I	7	14	anti-parallel
Strand 4	I	54	57	parallel
Strand 5	I	361	364	anti-parallel
Strand 6	I	375	380	anti-parallel
Strand 7	I	383	387	anti-parallel

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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	64	first strand
Strand 2	I	112	117	parallel
Strand 3	I	125	133	anti-parallel
Strand 4	I	143	153	anti-parallel
Strand 5	I	223	227	parallel
Strand 6	I	247	251	parallel
Strand 7	I	269	271	parallel
Strand 8	I	301	303	parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	37	first strand
Strand 2	J	22	29	anti-parallel
Strand 3	J	7	14	anti-parallel
Strand 4	J	46	49	parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	37	first strand
Strand 2	J	22	29	anti-parallel
Strand 3	J	7	14	anti-parallel
Strand 4	J	54	57	parallel
Strand 5	J	361	364	anti-parallel
Strand 6	J	375	380	anti-parallel
Strand 7	J	383	387	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	59	64	first strand
Strand 2	J	112	117	parallel
Strand 3	J	125	133	anti-parallel
Strand 4	J	143	153	anti-parallel
Strand 5	J	223	227	parallel
Strand 6	J	247	251	parallel
Strand 7	J	269	271	parallel
Strand 8	J	301	303	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OOQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOQ