Analysis of interatomic Contacts of Structural Units in PDB entry:
3OOX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OOX entry

There are 2 chains in PDB entry 3OOX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 309
B
 THR 3ILE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3OOX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed alpha
Helix 2
2
A
17 33Right-handed alpha
Helix 3
3
A
43 59Right-handed alpha
Helix 4
4
A
61 66Right-handed alpha
Helix 5
5
A
67 69Right-handed 310
Helix 6
6
A
71 75Right-handed 310
Helix 7
7
A
108 113Right-handed 310
Helix 8
8
A
125 152Right-handed alpha
Helix 9
9
A
159 164Right-handed alpha
Helix 10
10
A
231 238Right-handed alpha
Helix 11
11
A
253 257Right-handed 310
Helix 12
12
A
279 283Right-handed 310
Helix 13
13
A
297 309Right-handed alpha
Helix 14
14
B
11 17Right-handed alpha
Helix 15
15
B
17 33Right-handed alpha
Helix 16
16
B
43 59Right-handed alpha
Helix 17
17
B
61 67Right-handed alpha
Helix 18
18
B
108 113Right-handed 310
Helix 19
19
B
125 152Right-handed alpha
Helix 20
20
B
159 164Right-handed alpha
Helix 21
21
B
231 238Right-handed alpha
Helix 22
22
B
253 257Right-handed 310
Helix 23
23
B
279 283Right-handed 310
Helix 24
24
B
297 308Right-handed alpha
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There are 8 sheets in PDB entry 3OOX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
34 38parallel
Strand 3
A
226 230anti-parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
266 268anti-parallel
Strand 6
A
169 175anti-parallel
Strand 7
A
96 100anti-parallel
Strand 8
A
77 79anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
34 38parallel
Strand 3
A
226 230anti-parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
266 268anti-parallel
Strand 6
A
169 175anti-parallel
Strand 7
A
261 263anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
247 249anti-parallel
Strand 3
A
207 210anti-parallel
Strand 4
A
216 218anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
295 296anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
34 38parallel
Strand 3
B
226 230anti-parallel
Strand 4
B
196 200anti-parallel
Strand 5
B
266 268anti-parallel
Strand 6
B
169 175anti-parallel
Strand 7
B
96 100anti-parallel
Strand 8
B
77 79anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
34 38parallel
Strand 3
B
226 230anti-parallel
Strand 4
B
196 200anti-parallel
Strand 5
B
266 268anti-parallel
Strand 6
B
169 175anti-parallel
Strand 7
B
261 263anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
247 249anti-parallel
Strand 3
B
207 210anti-parallel
Strand 4
B
216 218anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 276first strand
Strand 2
B
295 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il