Analysis of interatomic Contacts of Structural Units in PDB entry:
3OP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OP2 entry

There are 2 chains in PDB entry 3OP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ILE 381
B
 SER 2ALA 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3OP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 68Right-handed alpha
Helix 2
2
A
69 74Right-handed alpha
Helix 3
3
A
80 92Right-handed alpha
Helix 4
4
A
101 122Right-handed alpha
Helix 5
5
A
125 130Right-handed alpha
Helix 6
6
A
151 165Right-handed alpha
Helix 7
7
A
177 193Right-handed alpha
Helix 8
8
A
207 221Right-handed alpha
Helix 9
9
A
234 244Right-handed alpha
Helix 10
10
A
258 268Right-handed alpha
Helix 11
11
A
282 297Right-handed alpha
Helix 12
12
A
308 322Right-handed alpha
Helix 13
13
A
335 340Right-handed alpha
Helix 14
14
A
366 373Right-handed alpha
Helix 15
15
B
57 68Right-handed alpha
Helix 16
16
B
69 74Right-handed alpha
Helix 17
17
B
80 90Right-handed alpha
Helix 18
18
B
101 123Right-handed alpha
Helix 19
19
B
125 130Right-handed alpha
Helix 20
20
B
151 165Right-handed alpha
Helix 21
21
B
177 193Right-handed alpha
Helix 22
22
B
207 222Right-handed alpha
Helix 23
23
B
234 244Right-handed alpha
Helix 24
24
B
258 268Right-handed alpha
Helix 25
25
B
282 297Right-handed alpha
Helix 26
26
B
308 322Right-handed alpha
Helix 27
27
B
335 340Right-handed alpha
Helix 28
28
B
366 373Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3OP2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 16first strand
Strand 2
A
32 42anti-parallel
Strand 3
A
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
273 274parallel
Strand 3
A
249 252parallel
Strand 4
A
225 227parallel
Strand 5
A
197 201parallel
Strand 6
A
169 173parallel
Strand 7
A
139 146parallel
Strand 8
A
328 331parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
273 274parallel
Strand 3
A
249 252parallel
Strand 4
A
225 227parallel
Strand 5
A
197 201parallel
Strand 6
A
169 173parallel
Strand 7
A
139 146parallel
Strand 8
A
352 353anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 16first strand
Strand 2
B
32 42anti-parallel
Strand 3
B
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
B
273 274parallel
Strand 3
B
249 252parallel
Strand 4
B
225 227parallel
Strand 5
B
197 201parallel
Strand 6
B
169 173parallel
Strand 7
B
139 146parallel
Strand 8
B
328 331parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 301first strand
Strand 2
B
273 274parallel
Strand 3
B
249 252parallel
Strand 4
B
225 227parallel
Strand 5
B
197 201parallel
Strand 6
B
169 173parallel
Strand 7
B
139 146parallel
Strand 8
B
352 353anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il