Analysis of interatomic Contacts of Structural Units in PDB entry:
3OPV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OPV entry

There are 12 chains in PDB entry 3OPV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 237
B	ALA 1	LYS 237
C	ALA 1	LYS 237
D	ALA 1	LYS 237
E	ALA 1	LYS 237
F	ALA 1	LYS 237
G	ALA 1	LYS 237
H	ALA 1	LYS 237
I	ALA 1	LYS 237
J	ALA 1	LYS 237
K	ALA 1	LYS 237
L	ALA 1	LYS 237

There are 96 helices in PDB entry 3OPV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	33	Right-handed alpha
Helix 2	2	A	41	45	Right-handed 310
Helix 3	3	A	65	80	Right-handed alpha
Helix 4	4	A	114	120	Right-handed alpha
Helix 5	5	A	130	144	Right-handed alpha
Helix 6	6	A	165	173	Right-handed alpha
Helix 7	7	A	181	192	Right-handed alpha
Helix 8	8	A	215	236	Right-handed alpha
Helix 9	9	B	21	33	Right-handed alpha
Helix 10	10	B	41	45	Right-handed 310
Helix 11	11	B	65	80	Right-handed alpha
Helix 12	12	B	114	120	Right-handed alpha
Helix 13	13	B	130	144	Right-handed alpha
Helix 14	14	B	165	173	Right-handed alpha
Helix 15	15	B	181	192	Right-handed alpha
Helix 16	16	B	213	237	Right-handed alpha
Helix 17	17	C	21	32	Right-handed alpha
Helix 18	18	C	41	45	Right-handed 310
Helix 19	19	C	65	80	Right-handed alpha
Helix 20	20	C	114	120	Right-handed alpha
Helix 21	21	C	130	143	Right-handed alpha
Helix 22	22	C	164	173	Right-handed alpha
Helix 23	23	C	181	192	Right-handed alpha
Helix 24	24	C	213	237	Right-handed alpha
Helix 25	25	D	21	32	Right-handed alpha
Helix 26	26	D	41	45	Right-handed 310
Helix 27	27	D	65	80	Right-handed alpha
Helix 28	28	D	114	120	Right-handed alpha
Helix 29	29	D	130	144	Right-handed alpha
Helix 30	30	D	164	173	Right-handed alpha
Helix 31	31	D	181	192	Right-handed alpha
Helix 32	32	D	213	237	Right-handed alpha
Helix 33	33	E	21	33	Right-handed alpha
Helix 34	34	E	41	45	Right-handed 310
Helix 35	35	E	65	80	Right-handed alpha
Helix 36	36	E	114	120	Right-handed alpha
Helix 37	37	E	130	144	Right-handed alpha
Helix 38	38	E	165	173	Right-handed alpha
Helix 39	39	E	181	192	Right-handed alpha
Helix 40	40	E	215	237	Right-handed alpha
Helix 41	41	F	21	32	Right-handed alpha
Helix 42	42	F	41	45	Right-handed 310
Helix 43	43	F	65	80	Right-handed alpha
Helix 44	44	F	114	120	Right-handed alpha
Helix 45	45	F	130	144	Right-handed alpha
Helix 46	46	F	164	173	Right-handed alpha
Helix 47	47	F	181	192	Right-handed alpha
Helix 48	48	F	213	237	Right-handed alpha
Helix 49	49	G	21	33	Right-handed alpha
Helix 50	50	G	41	45	Right-handed 310
Helix 51	51	G	65	80	Right-handed alpha
Helix 52	52	G	114	120	Right-handed alpha
Helix 53	53	G	130	144	Right-handed alpha
Helix 54	54	G	165	173	Right-handed alpha
Helix 55	55	G	181	192	Right-handed alpha
Helix 56	56	G	213	237	Right-handed alpha
Helix 57	57	H	21	33	Right-handed alpha
Helix 58	58	H	41	45	Right-handed 310
Helix 59	59	H	65	80	Right-handed alpha
Helix 60	60	H	114	120	Right-handed alpha
Helix 61	61	H	130	144	Right-handed alpha
Helix 62	62	H	164	173	Right-handed alpha
Helix 63	63	H	181	193	Right-handed alpha
Helix 64	64	H	213	237	Right-handed alpha
Helix 65	65	I	21	33	Right-handed alpha
Helix 66	66	I	41	45	Right-handed 310
Helix 67	67	I	65	80	Right-handed alpha
Helix 68	68	I	114	120	Right-handed alpha
Helix 69	69	I	130	144	Right-handed alpha
Helix 70	70	I	165	173	Right-handed alpha
Helix 71	71	I	181	193	Right-handed alpha
Helix 72	72	I	213	237	Right-handed alpha
Helix 73	73	J	21	33	Right-handed alpha
Helix 74	74	J	41	45	Right-handed 310
Helix 75	75	J	65	80	Right-handed alpha
Helix 76	76	J	114	120	Right-handed alpha
Helix 77	77	J	130	145	Right-handed alpha
Helix 78	78	J	165	173	Right-handed alpha
Helix 79	79	J	181	192	Right-handed alpha
Helix 80	80	J	213	237	Right-handed alpha
Helix 81	81	K	21	33	Right-handed alpha
Helix 82	82	K	41	45	Right-handed 310
Helix 83	83	K	65	80	Right-handed alpha
Helix 84	84	K	114	120	Right-handed alpha
Helix 85	85	K	130	144	Right-handed alpha
Helix 86	86	K	165	173	Right-handed alpha
Helix 87	87	K	181	192	Right-handed alpha
Helix 88	88	K	213	237	Right-handed alpha
Helix 89	89	L	21	33	Right-handed alpha
Helix 90	90	L	41	45	Right-handed 310
Helix 91	91	L	65	81	Right-handed alpha
Helix 92	92	L	114	120	Right-handed alpha
Helix 93	93	L	130	144	Right-handed alpha
Helix 94	94	L	164	173	Right-handed alpha
Helix 95	95	L	181	193	Right-handed alpha
Helix 96	96	L	213	237	Right-handed alpha

There are 12 sheets in PDB entry 3OPV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	55	60	anti-parallel
Strand 4	A	15	18	parallel
Strand 5	A	84	93	parallel
Strand 6	A	195	205	parallel
Strand 7	A	103	111	anti-parallel
Strand 8	A	148	155	parallel
Strand 9	A	177	179	parallel
Strand 10	A	84	93	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	40	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	55	60	anti-parallel
Strand 4	B	15	18	parallel
Strand 5	B	84	93	parallel
Strand 6	B	195	205	parallel
Strand 7	B	103	111	anti-parallel
Strand 8	B	148	155	parallel
Strand 9	B	177	179	parallel
Strand 10	B	84	93	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	40	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	55	60	anti-parallel
Strand 4	C	15	18	parallel
Strand 5	C	84	93	parallel
Strand 6	C	195	205	parallel
Strand 7	C	103	111	anti-parallel
Strand 8	C	148	155	parallel
Strand 9	C	175	179	parallel
Strand 10	C	84	93	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	40	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	55	60	anti-parallel
Strand 4	D	15	18	parallel
Strand 5	D	84	93	parallel
Strand 6	D	195	205	parallel
Strand 7	D	103	111	anti-parallel
Strand 8	D	148	155	parallel
Strand 9	D	177	179	parallel
Strand 10	D	84	93	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	40	first strand
Strand 2	E	47	52	anti-parallel
Strand 3	E	55	60	anti-parallel
Strand 4	E	15	18	parallel
Strand 5	E	84	93	parallel
Strand 6	E	195	205	parallel
Strand 7	E	103	111	anti-parallel
Strand 8	E	148	155	parallel
Strand 9	E	177	179	parallel
Strand 10	E	84	93	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	40	first strand
Strand 2	F	47	52	anti-parallel
Strand 3	F	55	60	anti-parallel
Strand 4	F	15	18	parallel
Strand 5	F	84	93	parallel
Strand 6	F	195	205	parallel
Strand 7	F	103	111	anti-parallel
Strand 8	F	148	155	parallel
Strand 9	F	177	179	parallel
Strand 10	F	84	93	anti-parallel

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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	40	first strand
Strand 2	G	47	52	anti-parallel
Strand 3	G	55	60	anti-parallel
Strand 4	G	15	18	parallel
Strand 5	G	84	93	parallel
Strand 6	G	195	205	parallel
Strand 7	G	103	111	anti-parallel
Strand 8	G	148	155	parallel
Strand 9	G	177	179	parallel
Strand 10	G	84	93	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	40	first strand
Strand 2	H	47	52	anti-parallel
Strand 3	H	55	60	anti-parallel
Strand 4	H	15	18	parallel
Strand 5	H	84	93	parallel
Strand 6	H	195	205	parallel
Strand 7	H	103	111	anti-parallel
Strand 8	H	149	155	parallel
Strand 9	H	177	179	parallel
Strand 10	H	84	93	anti-parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	40	first strand
Strand 2	I	47	52	anti-parallel
Strand 3	I	55	60	anti-parallel
Strand 4	I	15	18	parallel
Strand 5	I	84	93	parallel
Strand 6	I	195	205	parallel
Strand 7	I	103	111	anti-parallel
Strand 8	I	148	155	parallel
Strand 9	I	177	179	parallel
Strand 10	I	84	93	anti-parallel

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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	40	first strand
Strand 2	J	47	52	anti-parallel
Strand 3	J	55	60	anti-parallel
Strand 4	J	15	18	parallel
Strand 5	J	84	93	parallel
Strand 6	J	195	205	parallel
Strand 7	J	103	111	anti-parallel
Strand 8	J	148	155	parallel
Strand 9	J	177	179	parallel
Strand 10	J	84	93	anti-parallel

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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	40	first strand
Strand 2	K	47	52	anti-parallel
Strand 3	K	55	60	anti-parallel
Strand 4	K	15	18	parallel
Strand 5	K	84	93	parallel
Strand 6	K	195	205	parallel
Strand 7	K	103	111	anti-parallel
Strand 8	K	148	155	parallel
Strand 9	K	177	179	parallel
Strand 10	K	84	93	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	40	first strand
Strand 2	L	47	52	anti-parallel
Strand 3	L	55	60	anti-parallel
Strand 4	L	15	18	parallel
Strand 5	L	84	93	parallel
Strand 6	L	195	205	parallel
Strand 7	L	103	111	anti-parallel
Strand 8	L	148	155	parallel
Strand 9	L	177	179	parallel
Strand 10	L	84	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OPV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OPV