Analysis of interatomic Contacts of Structural Units in PDB entry:
3OQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OQ5 entry

There are 3 chains in PDB entry 3OQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 206	LEU 518
B	TRP 206	LEU 518
C	TRP 206	LEU 518

There are 29 helices in PDB entry 3OQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	207	216	Right-handed alpha
Helix 2	2	A	221	225	Right-handed 310
Helix 3	3	A	226	231	Right-handed alpha
Helix 4	4	A	294	300	Right-handed alpha
Helix 5	5	A	315	323	Right-handed alpha
Helix 6	6	A	329	333	Right-handed 310
Helix 7	7	A	401	407	Right-handed alpha
Helix 8	8	A	423	431	Right-handed alpha
Helix 9	9	A	487	491	Right-handed 310
Helix 10	10	A	505	511	Right-handed alpha
Helix 11	11	B	207	216	Right-handed alpha
Helix 12	12	B	221	225	Right-handed 310
Helix 13	13	B	226	231	Right-handed alpha
Helix 14	14	B	294	300	Right-handed alpha
Helix 15	15	B	315	323	Right-handed alpha
Helix 16	16	B	329	333	Right-handed 310
Helix 17	17	B	423	431	Right-handed alpha
Helix 18	18	B	487	491	Right-handed 310
Helix 19	19	B	505	511	Right-handed alpha
Helix 20	20	C	207	216	Right-handed alpha
Helix 21	21	C	221	225	Right-handed 310
Helix 22	22	C	226	231	Right-handed alpha
Helix 23	23	C	294	299	Right-handed alpha
Helix 24	24	C	315	323	Right-handed alpha
Helix 25	25	C	329	333	Right-handed 310
Helix 26	26	C	401	407	Right-handed alpha
Helix 27	27	C	423	431	Right-handed alpha
Helix 28	28	C	487	491	Right-handed 310
Helix 29	29	C	505	511	Right-handed alpha

There are 12 sheets in PDB entry 3OQ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	267	272	anti-parallel
Strand 3	A	251	264	anti-parallel
Strand 4	A	243	248	anti-parallel
Strand 5	A	290	291	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	267	272	anti-parallel
Strand 3	A	251	264	anti-parallel
Strand 4	A	303	304	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	350	354	anti-parallel
Strand 5	A	397	398	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	495	first strand
Strand 2	A	478	483	anti-parallel
Strand 3	A	466	474	anti-parallel
Strand 4	A	454	458	anti-parallel
Strand 5	A	501	502	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	267	272	anti-parallel
Strand 3	B	251	264	anti-parallel
Strand 4	B	243	248	anti-parallel
Strand 5	B	290	291	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	267	272	anti-parallel
Strand 3	B	251	264	anti-parallel
Strand 4	B	303	304	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	362	371	anti-parallel
Strand 4	B	350	354	anti-parallel
Strand 5	B	397	398	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	495	first strand
Strand 2	B	478	483	anti-parallel
Strand 3	B	466	474	anti-parallel
Strand 4	B	454	458	anti-parallel
Strand 5	B	501	502	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	267	272	anti-parallel
Strand 3	C	251	264	anti-parallel
Strand 4	C	243	248	anti-parallel
Strand 5	C	290	291	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	267	272	anti-parallel
Strand 3	C	251	264	anti-parallel
Strand 4	C	303	304	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	390	first strand
Strand 2	C	374	379	anti-parallel
Strand 3	C	362	371	anti-parallel
Strand 4	C	350	354	anti-parallel
Strand 5	C	397	398	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	495	first strand
Strand 2	C	478	483	anti-parallel
Strand 3	C	466	474	anti-parallel
Strand 4	C	454	458	anti-parallel
Strand 5	C	501	502	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OQ5