Analysis of interatomic Contacts of Structural Units in PDB entry:
3OQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OQ8 entry

There are 4 chains in PDB entry 3OQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 426
B
 ASP 3PHE 424
C
 ASP 3LYS 425
D
 ASP 3ILE 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 3OQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
39 56Right-handed alpha
Helix 4
4
A
66 76Right-handed alpha
Helix 5
5
A
84 92Right-handed alpha
Helix 6
6
A
108 132Right-handed alpha
Helix 7
7
A
154 168Right-handed alpha
Helix 8
8
A
179 183Right-handed 310
Helix 9
9
A
195 214Right-handed alpha
Helix 10
10
A
239 243Right-handed 310
Helix 11
11
A
260 272Right-handed alpha
Helix 12
12
A
273 275Right-handed 310
Helix 13
13
A
286 301Right-handed alpha
Helix 14
14
A
315 320Right-handed alpha
Helix 15
15
A
321 335Right-handed alpha
Helix 16
16
A
344 365Right-handed alpha
Helix 17
17
A
365 380Right-handed alpha
Helix 18
18
A
381 383Right-handed 310
Helix 19
19
A
388 394Right-handed alpha
Helix 20
20
A
394 406Right-handed alpha
Helix 21
21
A
418 424Right-handed alpha
Helix 22
22
B
3 8Right-handed alpha
Helix 23
23
B
24 32Right-handed alpha
Helix 24
24
B
39 56Right-handed alpha
Helix 25
25
B
66 76Right-handed alpha
Helix 26
26
B
84 92Right-handed alpha
Helix 27
27
B
108 132Right-handed alpha
Helix 28
28
B
154 168Right-handed alpha
Helix 29
29
B
179 183Right-handed 310
Helix 30
30
B
195 214Right-handed alpha
Helix 31
31
B
239 243Right-handed 310
Helix 32
32
B
260 272Right-handed alpha
Helix 33
33
B
273 275Right-handed 310
Helix 34
34
B
286 301Right-handed alpha
Helix 35
35
B
315 320Right-handed alpha
Helix 36
36
B
321 335Right-handed alpha
Helix 37
37
B
344 365Right-handed alpha
Helix 38
38
B
365 380Right-handed alpha
Helix 39
39
B
381 383Right-handed 310
Helix 40
40
B
388 394Right-handed alpha
Helix 41
41
B
394 406Right-handed alpha
Helix 42
42
B
418 424Right-handed alpha
Helix 43
43
C
3 8Right-handed alpha
Helix 44
44
C
24 32Right-handed alpha
Helix 45
45
C
39 56Right-handed alpha
Helix 46
46
C
66 76Right-handed alpha
Helix 47
47
C
84 92Right-handed alpha
Helix 48
48
C
108 132Right-handed alpha
Helix 49
49
C
154 169Right-handed alpha
Helix 50
50
C
179 183Right-handed 310
Helix 51
51
C
195 214Right-handed alpha
Helix 52
52
C
239 243Right-handed 310
Helix 53
53
C
260 272Right-handed alpha
Helix 54
54
C
273 275Right-handed 310
Helix 55
55
C
286 301Right-handed alpha
Helix 56
56
C
315 320Right-handed alpha
Helix 57
57
C
321 335Right-handed alpha
Helix 58
58
C
344 365Right-handed alpha
Helix 59
59
C
365 380Right-handed alpha
Helix 60
60
C
381 383Right-handed 310
Helix 61
61
C
388 393Right-handed alpha
Helix 62
62
C
394 406Right-handed alpha
Helix 63
63
C
418 424Right-handed alpha
Helix 64
64
D
24 32Right-handed alpha
Helix 65
65
D
39 56Right-handed alpha
Helix 66
66
D
66 76Right-handed alpha
Helix 67
67
D
84 92Right-handed alpha
Helix 68
68
D
108 132Right-handed alpha
Helix 69
69
D
154 169Right-handed alpha
Helix 70
70
D
179 183Right-handed 310
Helix 71
71
D
195 214Right-handed alpha
Helix 72
72
D
236 243Right-handed 310
Helix 73
73
D
260 272Right-handed alpha
Helix 74
74
D
273 275Right-handed 310
Helix 75
75
D
286 301Right-handed alpha
Helix 76
76
D
315 320Right-handed alpha
Helix 77
77
D
321 335Right-handed alpha
Helix 78
78
D
344 365Right-handed alpha
Helix 79
79
D
365 380Right-handed alpha
Helix 80
80
D
381 383Right-handed 310
Helix 81
81
D
388 393Right-handed alpha
Helix 82
82
D
394 406Right-handed alpha
Helix 83
83
D
418 424Right-handed alpha
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There are 8 sheets in PDB entry 3OQ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
337 342parallel
Strand 3
A
305 309parallel
Strand 4
A
277 280parallel
Strand 5
A
218 223parallel
Strand 6
A
172 176parallel
Strand 7
A
144 147parallel
Strand 8
A
81 83parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
230 231parallel
Strand 3
A
255 256anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
337 342parallel
Strand 3
B
305 309parallel
Strand 4
B
277 280parallel
Strand 5
B
218 223parallel
Strand 6
B
172 176parallel
Strand 7
B
144 147parallel
Strand 8
B
81 83parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
230 231parallel
Strand 3
B
255 256anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
337 342parallel
Strand 3
C
306 309parallel
Strand 4
C
277 280parallel
Strand 5
C
218 223parallel
Strand 6
C
172 176parallel
Strand 7
C
144 147parallel
Strand 8
C
81 83parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 193first strand
Strand 2
C
230 231parallel
Strand 3
C
255 256anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
337 342parallel
Strand 3
D
305 309parallel
Strand 4
D
277 280parallel
Strand 5
D
218 223parallel
Strand 6
D
172 176parallel
Strand 7
D
144 147parallel
Strand 8
D
81 83parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
192 193first strand
Strand 2
D
230 231parallel
Strand 3
D
255 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il