Analysis of interatomic Contacts of Structural Units in PDB entry:
3OQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OQQ entry

There is 1 chain in PDB entry 3OQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 40TRP 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 3OQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 166Right-handed 310
Helix 2
2
A
222 224Right-handed 310
Helix 3
3
A
295 298Right-handed 310
Helix 4
4
A
334 350Right-handed alpha
Helix 5
5
A
377 386Right-handed alpha
Helix 6
6
A
421 426Right-handed alpha
Helix 7
7
A
428 435Right-handed alpha
Helix 8
8
A
442 446Right-handed 310
Helix 9
9
A
448 450Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 3OQQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 98first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
57 62anti-parallel
Strand 5
A
143 152anti-parallel
Strand 6
A
171 182anti-parallel
Strand 7
A
194 205anti-parallel
Strand 8
A
319 328anti-parallel
Strand 9
A
226 236anti-parallel
Strand 10
A
242 251anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 98first strand
Strand 2
A
80 86anti-parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
57 62anti-parallel
Strand 5
A
143 152anti-parallel
Strand 6
A
406 409anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 75first strand
Strand 2
A
117 125anti-parallel
Strand 3
A
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 263first strand
Strand 2
A
274 284anti-parallel
Strand 3
A
287 293anti-parallel
Strand 4
A
211 219anti-parallel
Strand 5
A
354 360anti-parallel
Strand 6
A
364 367anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
452 453anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il