Analysis of interatomic Contacts of Structural Units in PDB entry:
3ORJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ORJ entry

There is 1 chain in PDB entry 3ORJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 33ASP 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3ORJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 96Right-handed 310
Helix 2
2
A
224 226Right-handed 310
Helix 3
3
A
273 277Right-handed 310
Helix 4
4
A
299 303Right-handed 310
Helix 5
5
A
377 384Right-handed 310
Helix 6
6
A
391 402Right-handed alpha
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There are 9 sheets in PDB entry 3ORJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
100 104anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
136 138parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
81 84anti-parallel
Strand 3
A
121 126anti-parallel
Strand 4
A
129 134anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
191 195anti-parallel
Strand 4
A
184 185anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
208 211anti-parallel
Strand 4
A
214 217anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
441 450anti-parallel
Strand 3
A
269 271anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
441 450anti-parallel
Strand 3
A
314 321anti-parallel
Strand 4
A
370 375anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
283 291anti-parallel
Strand 3
A
408 413anti-parallel
Strand 4
A
331 335anti-parallel
Strand 5
A
349 352anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 417first strand
Strand 2
A
431 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il