Analysis of interatomic Contacts of Structural Units in PDB entry:
3OTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OTH entry

There are 2 chains in PDB entry 3OTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -6SER 388
B
 MSE 1SER 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3OTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
17 27Right-handed alpha
Helix 3
3
A
36 38Right-handed 310
Helix 4
4
A
39 46Right-handed alpha
Helix 5
5
A
56 70Right-handed alpha
Helix 6
6
A
78 83Right-handed alpha
Helix 7
7
A
85 92Right-handed alpha
Helix 8
8
A
92 110Right-handed alpha
Helix 9
9
A
120 131Right-handed alpha
Helix 10
10
A
145 162Right-handed alpha
Helix 11
11
A
171 176Right-handed 310
Helix 12
12
A
183 187Right-handed 310
Helix 13
13
A
188 193Right-handed alpha
Helix 14
14
A
212 218Right-handed 310
Helix 15
15
A
236 249Right-handed alpha
Helix 16
16
A
281 286Right-handed alpha
Helix 17
17
A
287 289Right-handed 310
Helix 18
18
A
297 308Right-handed alpha
Helix 19
19
A
319 330Right-handed alpha
Helix 20
20
A
342 356Right-handed alpha
Helix 21
21
A
356 372Right-handed alpha
Helix 22
22
A
375 380Right-handed alpha
Helix 23
23
A
382 388Right-handed alpha
Helix 24
24
B
10 15Right-handed alpha
Helix 25
25
B
17 27Right-handed alpha
Helix 26
26
B
36 38Right-handed 310
Helix 27
27
B
39 46Right-handed alpha
Helix 28
28
B
56 70Right-handed alpha
Helix 29
29
B
78 83Right-handed alpha
Helix 30
30
B
84 92Right-handed alpha
Helix 31
31
B
92 110Right-handed alpha
Helix 32
32
B
120 131Right-handed alpha
Helix 33
33
B
145 162Right-handed alpha
Helix 34
34
B
171 176Right-handed 310
Helix 35
35
B
188 193Right-handed alpha
Helix 36
36
B
212 218Right-handed 310
Helix 37
37
B
236 249Right-handed alpha
Helix 38
38
B
281 286Right-handed alpha
Helix 39
39
B
287 289Right-handed 310
Helix 40
40
B
297 307Right-handed alpha
Helix 41
41
B
319 330Right-handed alpha
Helix 42
42
B
337 341Right-handed 310
Helix 43
43
B
342 356Right-handed alpha
Helix 44
44
B
357 373Right-handed alpha
Helix 45
45
B
375 380Right-handed alpha
Helix 46
46
B
382 388Right-handed alpha
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There are 4 sheets in PDB entry 3OTH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
30 35parallel
Strand 3
A
2 6parallel
Strand 4
A
113 117parallel
Strand 5
A
134 137parallel
Strand 6
A
178 180parallel
Strand 7
A
197 199parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
253 257parallel
Strand 3
A
224 228parallel
Strand 4
A
291 294parallel
Strand 5
A
311 313parallel
Strand 6
A
333 335parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
30 35parallel
Strand 3
B
2 6parallel
Strand 4
B
113 117parallel
Strand 5
B
134 137parallel
Strand 6
B
178 180parallel
Strand 7
B
197 199parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
253 257parallel
Strand 3
B
224 228parallel
Strand 4
B
291 294parallel
Strand 5
B
311 313parallel
Strand 6
B
333 335parallel
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