Analysis of interatomic Contacts of Structural Units in PDB entry:
3OTN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OTN entry

There are 2 chains in PDB entry 3OTN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36TYR 506
B
 LYS 36TYR 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3OTN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 50Right-handed alpha
Helix 2
2
A
51 58Right-handed 310
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
83 86Right-handed 310
Helix 5
5
A
87 93Right-handed alpha
Helix 6
6
A
102 125Right-handed alpha
Helix 7
7
A
131 158Right-handed alpha
Helix 8
8
A
166 170Right-handed 310
Helix 9
9
A
179 187Right-handed alpha
Helix 10
10
A
187 197Right-handed alpha
Helix 11
11
A
210 227Right-handed alpha
Helix 12
12
A
233 250Right-handed alpha
Helix 13
13
A
259 268Right-handed 310
Helix 14
14
A
286 292Right-handed 310
Helix 15
15
A
312 317Right-handed alpha
Helix 16
16
A
323 327Right-handed 310
Helix 17
17
A
347 351Right-handed 310
Helix 18
18
A
365 371Right-handed alpha
Helix 19
19
A
384 400Right-handed alpha
Helix 20
20
A
403 417Right-handed alpha
Helix 21
21
A
426 443Right-handed alpha
Helix 22
22
A
447 456Right-handed alpha
Helix 23
23
A
481 486Right-handed 310
Helix 24
24
A
490 497Right-handed alpha
Helix 25
25
B
38 50Right-handed alpha
Helix 26
26
B
51 58Right-handed 310
Helix 27
27
B
67 71Right-handed 310
Helix 28
28
B
83 86Right-handed 310
Helix 29
29
B
87 93Right-handed alpha
Helix 30
30
B
102 125Right-handed alpha
Helix 31
31
B
131 158Right-handed alpha
Helix 32
32
B
166 170Right-handed 310
Helix 33
33
B
179 187Right-handed alpha
Helix 34
34
B
187 197Right-handed alpha
Helix 35
35
B
210 227Right-handed alpha
Helix 36
36
B
233 251Right-handed alpha
Helix 37
37
B
258 268Right-handed 310
Helix 38
38
B
286 292Right-handed 310
Helix 39
39
B
312 317Right-handed alpha
Helix 40
40
B
323 327Right-handed 310
Helix 41
41
B
347 351Right-handed 310
Helix 42
42
B
365 371Right-handed alpha
Helix 43
43
B
384 400Right-handed alpha
Helix 44
44
B
403 417Right-handed alpha
Helix 45
45
B
426 443Right-handed alpha
Helix 46
46
B
447 456Right-handed alpha
Helix 47
47
B
481 486Right-handed 310
Helix 48
48
B
490 497Right-handed alpha
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There are 9 sheets in PDB entry 3OTN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
66 67anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
379 383anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
353 360anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
466 468anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
310 311anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 277first strand
Strand 2
B
379 383anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 335first strand
Strand 2
B
354 360anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 459first strand
Strand 2
B
466 468anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il