Analysis of interatomic Contacts of Structural Units in PDB entry:
3OTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OTR entry

There are 3 chains in PDB entry 3OTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 444
B
 MET 1HIS 447
C
 MET 1ASN 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 3OTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 61Right-handed 310
Helix 2
2
A
63 73Right-handed alpha
Helix 3
3
A
73 79Right-handed alpha
Helix 4
4
A
85 96Right-handed alpha
Helix 5
5
A
112 132Right-handed alpha
Helix 6
6
A
134 144Right-handed alpha
Helix 7
7
A
163 166Right-handed 310
Helix 8
8
A
184 208Right-handed alpha
Helix 9
9
A
209 213Right-handed 310
Helix 10
10
A
226 242Right-handed alpha
Helix 11
11
A
254 257Right-handed 310
Helix 12
12
A
276 278Right-handed 310
Helix 13
13
A
282 297Right-handed alpha
Helix 14
14
A
310 322Right-handed alpha
Helix 15
15
A
336 347Right-handed alpha
Helix 16
16
A
355 360Right-handed alpha
Helix 17
17
A
361 375Right-handed alpha
Helix 18
18
A
391 400Right-handed alpha
Helix 19
19
A
412 430Right-handed alpha
Helix 20
20
A
437 440Right-handed 310
Helix 21
21
B
57 61Right-handed 310
Helix 22
22
B
63 73Right-handed alpha
Helix 23
23
B
73 79Right-handed alpha
Helix 24
24
B
85 96Right-handed alpha
Helix 25
25
B
112 132Right-handed alpha
Helix 26
26
B
134 144Right-handed alpha
Helix 27
27
B
163 166Right-handed 310
Helix 28
28
B
184 208Right-handed alpha
Helix 29
29
B
209 213Right-handed 310
Helix 30
30
B
226 241Right-handed alpha
Helix 31
31
B
254 257Right-handed 310
Helix 32
32
B
282 297Right-handed alpha
Helix 33
33
B
310 322Right-handed alpha
Helix 34
34
B
323 325Right-handed 310
Helix 35
35
B
336 347Right-handed alpha
Helix 36
36
B
355 360Right-handed alpha
Helix 37
37
B
361 374Right-handed alpha
Helix 38
38
B
391 400Right-handed alpha
Helix 39
39
B
412 430Right-handed alpha
Helix 40
40
B
437 440Right-handed 310
Helix 41
41
C
57 61Right-handed 310
Helix 42
42
C
63 73Right-handed alpha
Helix 43
43
C
73 79Right-handed alpha
Helix 44
44
C
85 96Right-handed alpha
Helix 45
45
C
112 132Right-handed alpha
Helix 46
46
C
134 144Right-handed alpha
Helix 47
47
C
163 166Right-handed 310
Helix 48
48
C
184 208Right-handed alpha
Helix 49
49
C
209 213Right-handed 310
Helix 50
50
C
226 242Right-handed alpha
Helix 51
51
C
254 257Right-handed 310
Helix 52
52
C
282 297Right-handed alpha
Helix 53
53
C
310 322Right-handed alpha
Helix 54
54
C
336 347Right-handed alpha
Helix 55
55
C
355 360Right-handed alpha
Helix 56
56
C
361 375Right-handed alpha
Helix 57
57
C
391 400Right-handed alpha
Helix 58
58
C
412 430Right-handed alpha
Helix 59
59
C
437 440Right-handed 310
Helix 60
60
C
442 446Right-handed 310
Helix 61
61
D
57 61Right-handed 310
Helix 62
62
D
63 73Right-handed alpha
Helix 63
63
D
73 79Right-handed alpha
Helix 64
64
D
85 95Right-handed alpha
Helix 65
65
D
112 132Right-handed alpha
Helix 66
66
D
134 143Right-handed alpha
Helix 67
67
D
163 166Right-handed 310
Helix 68
68
D
184 208Right-handed alpha
Helix 69
69
D
209 213Right-handed 310
Helix 70
70
D
226 241Right-handed alpha
Helix 71
71
D
254 257Right-handed 310
Helix 72
72
D
282 297Right-handed alpha
Helix 73
73
D
310 322Right-handed alpha
Helix 74
74
D
336 346Right-handed alpha
Helix 75
75
D
355 360Right-handed alpha
Helix 76
76
D
361 374Right-handed alpha
Helix 77
77
D
391 400Right-handed alpha
Helix 78
78
D
412 430Right-handed alpha
Helix 79
79
D
437 440Right-handed 310
Helix 80
80
E
57 61Right-handed 310
Helix 81
81
E
63 73Right-handed alpha
Helix 82
82
E
73 79Right-handed alpha
Helix 83
83
E
85 96Right-handed alpha
Helix 84
84
E
112 131Right-handed alpha
Helix 85
85
E
134 144Right-handed alpha
Helix 86
86
E
163 166Right-handed 310
Helix 87
87
E
184 208Right-handed alpha
Helix 88
88
E
209 213Right-handed 310
Helix 89
89
E
226 242Right-handed alpha
Helix 90
90
E
254 257Right-handed 310
Helix 91
91
E
282 297Right-handed alpha
Helix 92
92
E
310 322Right-handed alpha
Helix 93
93
E
336 347Right-handed alpha
Helix 94
94
E
355 360Right-handed alpha
Helix 95
95
E
361 374Right-handed alpha
Helix 96
96
E
391 400Right-handed alpha
Helix 97
97
E
412 430Right-handed alpha
Helix 98
98
E
437 440Right-handed 310
Helix 99
99
F
57 61Right-handed 310
Helix 100
100
F
63 73Right-handed alpha
Helix 101
101
F
73 79Right-handed alpha
Helix 102
102
F
85 96Right-handed alpha
Helix 103
103
F
112 132Right-handed alpha
Helix 104
104
F
134 143Right-handed alpha
Helix 105
105
F
163 166Right-handed 310
Helix 106
106
F
184 208Right-handed alpha
Helix 107
107
F
209 213Right-handed 310
Helix 108
108
F
226 242Right-handed alpha
Helix 109
109
F
254 257Right-handed 310
Helix 110
110
F
282 297Right-handed alpha
Helix 111
111
F
310 322Right-handed alpha
Helix 112
112
F
336 346Right-handed alpha
Helix 113
113
F
355 360Right-handed alpha
Helix 114
114
F
361 374Right-handed alpha
Helix 115
115
F
391 400Right-handed alpha
Helix 116
116
F
412 430Right-handed alpha
Helix 117
117
F
437 440Right-handed 310
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There are 30 sheets in PDB entry 3OTR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 13first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
30 35anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
105 106anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
433 435parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
404 406parallel
Strand 3
A
378 382parallel
Strand 4
A
351 354parallel
Strand 5
A
326 329parallel
Strand 6
A
299 303parallel
Strand 7
A
248 252parallel
Strand 8
A
174 178anti-parallel
Strand 9
A
157 161anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
265 267anti-parallel
Strand 3
A
280 281anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 13first strand
Strand 2
B
19 27anti-parallel
Strand 3
B
30 35anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
105 106anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
433 435parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 161first strand
Strand 2
B
174 178anti-parallel
Strand 3
B
248 252anti-parallel
Strand 4
B
299 303parallel
Strand 5
B
326 329parallel
Strand 6
B
351 354parallel
Strand 7
B
378 382parallel
Strand 8
B
404 406parallel
Strand 9
B
154 161parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
265 266anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 13first strand
Strand 2
C
19 27anti-parallel
Strand 3
C
30 35anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 102first strand
Strand 2
C
105 106anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 152first strand
Strand 2
C
433 435parallel
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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 161first strand
Strand 2
C
174 178anti-parallel
Strand 3
C
248 252anti-parallel
Strand 4
C
299 303parallel
Strand 5
C
326 329parallel
Strand 6
C
351 354parallel
Strand 7
C
378 382parallel
Strand 8
C
404 406parallel
Strand 9
C
154 161parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 260first strand
Strand 2
C
265 266anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 13first strand
Strand 2
D
19 27anti-parallel
Strand 3
D
30 35anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 102first strand
Strand 2
D
105 106anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 152first strand
Strand 2
D
433 435parallel
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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
154 161first strand
Strand 2
D
174 178anti-parallel
Strand 3
D
248 252anti-parallel
Strand 4
D
299 303parallel
Strand 5
D
326 329parallel
Strand 6
D
351 354parallel
Strand 7
D
378 382parallel
Strand 8
D
404 406parallel
Strand 9
D
154 161parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
259 260first strand
Strand 2
D
265 266anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 13first strand
Strand 2
E
19 27anti-parallel
Strand 3
E
30 35anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 102first strand
Strand 2
E
105 106anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 152first strand
Strand 2
E
433 435parallel
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There are 9 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
154 155first strand
Strand 2
E
404 406parallel
Strand 3
E
378 382parallel
Strand 4
E
351 354parallel
Strand 5
E
326 329parallel
Strand 6
E
299 303parallel
Strand 7
E
248 252parallel
Strand 8
E
174 178anti-parallel
Strand 9
E
157 161anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
259 260first strand
Strand 2
E
265 266anti-parallel
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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 13first strand
Strand 2
F
19 27anti-parallel
Strand 3
F
30 35anti-parallel
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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
101 102first strand
Strand 2
F
105 106anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
150 152first strand
Strand 2
F
433 435parallel
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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
154 155first strand
Strand 2
F
404 406parallel
Strand 3
F
378 382parallel
Strand 4
F
351 354parallel
Strand 5
F
326 329parallel
Strand 6
F
299 303parallel
Strand 7
F
248 252parallel
Strand 8
F
174 178anti-parallel
Strand 9
F
157 161anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
259 260first strand
Strand 2
F
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il