Analysis of interatomic Contacts of Structural Units in PDB entry:
3OTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OTV entry

There are 4 chains in PDB entry 3OTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16LEU 269
B
 LEU 18ALA 261
C
 PRO 13LEU 269
D
 VAL 16ALA 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3OTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 83Right-handed alpha
Helix 2
2
A
114 119Right-handed alpha
Helix 3
3
A
123 144Right-handed alpha
Helix 4
4
A
152 154Right-handed 310
Helix 5
5
A
176 194Right-handed alpha
Helix 6
6
A
220 225Right-handed alpha
Helix 7
7
A
229 241Right-handed alpha
Helix 8
8
A
248 268Right-handed alpha
Helix 9
9
B
67 83Right-handed alpha
Helix 10
10
B
114 119Right-handed alpha
Helix 11
11
B
123 144Right-handed alpha
Helix 12
12
B
152 154Right-handed 310
Helix 13
13
B
176 194Right-handed alpha
Helix 14
14
B
220 225Right-handed alpha
Helix 15
15
B
229 241Right-handed alpha
Helix 16
16
B
248 261Right-handed alpha
Helix 17
17
C
67 80Right-handed alpha
Helix 18
18
C
114 119Right-handed alpha
Helix 19
19
C
123 144Right-handed alpha
Helix 20
20
C
152 154Right-handed 310
Helix 21
21
C
176 194Right-handed alpha
Helix 22
22
C
229 241Right-handed alpha
Helix 23
23
C
248 267Right-handed alpha
Helix 24
24
D
67 83Right-handed alpha
Helix 25
25
D
114 119Right-handed alpha
Helix 26
26
D
123 144Right-handed alpha
Helix 27
27
D
152 154Right-handed 310
Helix 28
28
D
176 194Right-handed alpha
Helix 29
29
D
220 225Right-handed alpha
Helix 30
30
D
229 241Right-handed alpha
Helix 31
31
D
248 263Right-handed alpha
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There are 8 sheets in PDB entry 3OTV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
A
101 107anti-parallel
Strand 6
A
92 98anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
164 166anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
53 59anti-parallel
Strand 5
B
101 107anti-parallel
Strand 6
B
92 98anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
164 166anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
29 34anti-parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
53 60anti-parallel
Strand 5
C
102 107anti-parallel
Strand 6
C
92 97anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
156 159anti-parallel
Strand 3
C
164 166anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
29 34anti-parallel
Strand 3
D
41 48anti-parallel
Strand 4
D
53 60anti-parallel
Strand 5
D
102 107anti-parallel
Strand 6
D
92 97anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 113first strand
Strand 2
D
156 159anti-parallel
Strand 3
D
164 166anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il