Analysis of interatomic Contacts of Structural Units in PDB entry:
3OUU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OUU entry

There are 2 chains in PDB entry 3OUU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2HIS 443
B
 MSE 1HIS 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3OUU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 25Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
41 46Right-handed alpha
Helix 4
4
A
57 62Right-handed 310
Helix 5
5
A
63 75Right-handed alpha
Helix 6
6
A
89 99Right-handed alpha
Helix 7
7
A
107 116Right-handed alpha
Helix 8
8
A
116 127Right-handed alpha
Helix 9
9
A
141 153Right-handed alpha
Helix 10
10
A
174 176Right-handed 310
Helix 11
11
A
177 194Right-handed alpha
Helix 12
12
A
249 267Right-handed alpha
Helix 13
13
A
297 306Right-handed alpha
Helix 14
14
A
308 318Right-handed alpha
Helix 15
15
A
324 328Right-handed 310
Helix 16
16
A
394 409Right-handed alpha
Helix 17
17
A
417 426Right-handed alpha
Helix 18
18
A
427 432Right-handed alpha
Helix 19
19
A
439 443Right-handed 310
Helix 20
20
B
11 25Right-handed alpha
Helix 21
21
B
36 38Right-handed 310
Helix 22
22
B
40 45Right-handed 310
Helix 23
23
B
56 61Right-handed alpha
Helix 24
24
B
63 74Right-handed alpha
Helix 25
25
B
89 99Right-handed alpha
Helix 26
26
B
107 116Right-handed alpha
Helix 27
27
B
116 127Right-handed alpha
Helix 28
28
B
141 153Right-handed alpha
Helix 29
29
B
174 194Right-handed alpha
Helix 30
30
B
249 267Right-handed alpha
Helix 31
31
B
297 306Right-handed alpha
Helix 32
32
B
308 318Right-handed alpha
Helix 33
33
B
324 328Right-handed 310
Helix 34
34
B
394 409Right-handed alpha
Helix 35
35
B
417 426Right-handed alpha
Helix 36
36
B
427 432Right-handed alpha
Helix 37
37
B
439 443Right-handed 310
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There are 14 sheets in PDB entry 3OUU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
28 34parallel
Strand 3
A
5 8parallel
Strand 4
A
78 80parallel
Strand 5
A
102 103parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
156 160anti-parallel
Strand 3
A
198 202anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 229first strand
Strand 2
A
208 216anti-parallel
Strand 3
A
271 279anti-parallel
Strand 4
A
285 291anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 238anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
333 340anti-parallel
Strand 3
A
384 392anti-parallel
Strand 4
A
365 369anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
410 412anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
28 34parallel
Strand 3
B
5 8parallel
Strand 4
B
78 80parallel
Strand 5
B
102 103parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
198 202anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 229first strand
Strand 2
B
208 216anti-parallel
Strand 3
B
271 279anti-parallel
Strand 4
B
285 291anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
237 238anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
333 340anti-parallel
Strand 3
B
384 392anti-parallel
Strand 4
B
365 369anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
376 377anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
410 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il