Analysis of interatomic Contacts of Structural Units in PDB entry:
3OVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OVW entry

There are 2 chains in PDB entry 3OVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 400
B
 THR 2VAL 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3OVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 38Right-handed alpha
Helix 2
2
A
63 69Right-handed alpha
Helix 3
3
A
77 83Right-handed alpha
Helix 4
4
A
155 157Right-handed 310
Helix 5
5
A
165 167Right-handed 310
Helix 6
6
A
225 228Right-handed 310
Helix 7
7
A
243 246Right-handed 310
Helix 8
8
A
312 317Right-handed alpha
Helix 9
9
A
321 325Right-handed alpha
Helix 10
10
A
328 338Right-handed alpha
Helix 11
11
A
355 358Right-handed alpha
Helix 12
12
A
372 378Right-handed alpha
Helix 13
13
B
35 38Right-handed alpha
Helix 14
14
B
63 69Right-handed alpha
Helix 15
15
B
77 83Right-handed alpha
Helix 16
16
B
155 157Right-handed 310
Helix 17
17
B
165 167Right-handed 310
Helix 18
18
B
225 228Right-handed 310
Helix 19
19
B
243 246Right-handed 310
Helix 20
20
B
312 317Right-handed alpha
Helix 21
21
B
321 325Right-handed alpha
Helix 22
22
B
328 338Right-handed alpha
Helix 23
23
B
355 358Right-handed alpha
Helix 24
24
B
372 378Right-handed alpha
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There are 6 sheets in PDB entry 3OVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
280 289anti-parallel
Strand 3
A
266 274anti-parallel
Strand 4
A
126 131anti-parallel
Strand 5
A
390 392anti-parallel
Strand 6
A
12 19parallel
Strand 7
A
23 33anti-parallel
Strand 8
A
106 110anti-parallel
Strand 9
A
341 348anti-parallel
Strand 10
A
140 147anti-parallel
Strand 11
A
197 203anti-parallel
Strand 12
A
210 213anti-parallel
Strand 13
A
239 241anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
383 387anti-parallel
Strand 4
A
130 132anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
221 223anti-parallel
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There are 13 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 295first strand
Strand 2
B
280 289anti-parallel
Strand 3
B
266 274anti-parallel
Strand 4
B
125 131anti-parallel
Strand 5
B
390 393anti-parallel
Strand 6
B
12 19parallel
Strand 7
B
23 33anti-parallel
Strand 8
B
106 110anti-parallel
Strand 9
B
341 348anti-parallel
Strand 10
B
140 147anti-parallel
Strand 11
B
197 203anti-parallel
Strand 12
B
210 213anti-parallel
Strand 13
B
239 241anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 88first strand
Strand 2
B
91 95anti-parallel
Strand 3
B
383 387anti-parallel
Strand 4
B
130 132anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
221 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il