Analysis of interatomic Contacts of Structural Units in PDB entry:
3OXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OXF entry

There are 2 chains in PDB entry 3OXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 428
B
 GLU 2ARG 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 3OXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 45Right-handed 310
Helix 2
2
A
72 84Right-handed alpha
Helix 3
3
A
86 94Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
118 122Right-handed 310
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
137 155Right-handed alpha
Helix 8
8
A
161 165Right-handed 310
Helix 9
9
A
170 182Right-handed alpha
Helix 10
10
A
200 204Right-handed 310
Helix 11
11
A
245 258Right-handed alpha
Helix 12
12
A
263 268Right-handed alpha
Helix 13
13
A
271 276Right-handed alpha
Helix 14
14
A
279 299Right-handed alpha
Helix 15
15
A
301 317Right-handed alpha
Helix 16
16
A
324 342Right-handed alpha
Helix 17
17
A
343 353Right-handed alpha
Helix 18
18
A
354 362Right-handed alpha
Helix 19
19
A
366 383Right-handed alpha
Helix 20
20
A
385 404Right-handed alpha
Helix 21
21
A
409 428Right-handed alpha
Helix 22
22
B
72 79Right-handed alpha
Helix 23
23
B
79 84Right-handed alpha
Helix 24
24
B
86 92Right-handed alpha
Helix 25
25
B
99 112Right-handed alpha
Helix 26
26
B
118 122Right-handed 310
Helix 27
27
B
132 136Right-handed 310
Helix 28
28
B
137 155Right-handed alpha
Helix 29
29
B
161 165Right-handed 310
Helix 30
30
B
170 182Right-handed alpha
Helix 31
31
B
200 204Right-handed 310
Helix 32
32
B
245 256Right-handed alpha
Helix 33
33
B
263 269Right-handed alpha
Helix 34
34
B
271 276Right-handed alpha
Helix 35
35
B
279 299Right-handed alpha
Helix 36
36
B
301 317Right-handed alpha
Helix 37
37
B
324 342Right-handed alpha
Helix 38
38
B
343 362Right-handed alpha
Helix 39
39
B
366 383Right-handed alpha
Helix 40
40
B
385 404Right-handed alpha
Helix 41
41
B
408 424Right-handed alpha
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There are 9 sheets in PDB entry 3OXF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
16 20anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
212 217anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
183 186anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
69 70anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
236 237parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
16 20anti-parallel
Strand 3
B
234 237anti-parallel
Strand 4
B
205 206parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
220 225anti-parallel
Strand 3
B
212 217anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
183 186anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
69 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il