Analysis of interatomic Contacts of Structural Units in PDB entry:
3OY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OY2 entry

There are 2 chains in PDB entry 3OY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 392
B
 MET 1ARG 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3OY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
54 61Right-handed alpha
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
90 101Right-handed alpha
Helix 5
5
A
102 104Right-handed 310
Helix 6
6
A
122 131Right-handed 310
Helix 7
7
A
143 151Right-handed alpha
Helix 8
8
A
171 176Right-handed alpha
Helix 9
9
A
178 182Right-handed 310
Helix 10
10
A
194 197Right-handed 310
Helix 11
11
A
198 213Right-handed alpha
Helix 12
12
A
231 244Right-handed alpha
Helix 13
13
A
247 253Right-handed alpha
Helix 14
14
A
263 274Right-handed alpha
Helix 15
15
A
287 295Right-handed alpha
Helix 16
16
A
305 312Right-handed alpha
Helix 17
17
A
342 353Right-handed alpha
Helix 18
18
A
355 371Right-handed alpha
Helix 19
19
A
375 391Right-handed alpha
Helix 20
20
B
14 29Right-handed alpha
Helix 21
21
B
54 61Right-handed alpha
Helix 22
22
B
72 81Right-handed alpha
Helix 23
23
B
90 101Right-handed alpha
Helix 24
24
B
102 104Right-handed 310
Helix 25
25
B
122 131Right-handed 310
Helix 26
26
B
143 151Right-handed alpha
Helix 27
27
B
171 176Right-handed alpha
Helix 28
28
B
178 184Right-handed 310
Helix 29
29
B
194 197Right-handed 310
Helix 30
30
B
198 213Right-handed alpha
Helix 31
31
B
231 244Right-handed alpha
Helix 32
32
B
247 253Right-handed alpha
Helix 33
33
B
263 274Right-handed alpha
Helix 34
34
B
287 295Right-handed alpha
Helix 35
35
B
305 312Right-handed alpha
Helix 36
36
B
342 354Right-handed alpha
Helix 37
37
B
355 372Right-handed alpha
Helix 38
38
B
375 390Right-handed alpha
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There are 6 sheets in PDB entry 3OY2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
32 38parallel
Strand 3
A
2 8parallel
Strand 4
A
84 89parallel
Strand 5
A
109 114parallel
Strand 6
A
134 139parallel
Strand 7
A
157 159parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
218 223parallel
Strand 3
A
185 188parallel
Strand 4
A
276 279parallel
Strand 5
A
300 303parallel
Strand 6
A
318 320parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
337 340anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
32 38parallel
Strand 3
B
2 8parallel
Strand 4
B
84 89parallel
Strand 5
B
109 114parallel
Strand 6
B
134 139parallel
Strand 7
B
157 159parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 258first strand
Strand 2
B
218 223parallel
Strand 3
B
185 188parallel
Strand 4
B
276 279parallel
Strand 5
B
300 303parallel
Strand 6
B
318 320parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
337 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il