Analysis of interatomic Contacts of Structural Units in PDB entry:
3OYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OYM entry

There are 4 chains in PDB entry 3OYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8GLN 375
B
 ASP 116ARG 299
C
 A 1 A 19
D
 T 1 A 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3OYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
50 52Right-handed 310
Helix 3
3
A
53 64Right-handed alpha
Helix 4
4
A
68 78Right-handed alpha
Helix 5
5
A
84 94Right-handed alpha
Helix 6
6
A
96 103Right-handed alpha
Helix 7
7
A
162 174Right-handed alpha
Helix 8
8
A
187 192Right-handed alpha
Helix 9
9
A
192 202Right-handed alpha
Helix 10
10
A
213 216Right-handed 310
Helix 11
11
A
217 236Right-handed alpha
Helix 12
12
A
242 244Right-handed 310
Helix 13
13
A
245 255Right-handed alpha
Helix 14
14
A
264 271Right-handed alpha
Helix 15
15
A
287 301Right-handed alpha
Helix 16
16
B
162 174Right-handed alpha
Helix 17
17
B
187 192Right-handed alpha
Helix 18
18
B
192 202Right-handed alpha
Helix 19
19
B
217 235Right-handed alpha
Helix 20
20
B
241 255Right-handed alpha
Helix 21
21
B
264 271Right-handed alpha
Helix 22
22
B
287 299Right-handed alpha
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There are 5 sheets in PDB entry 3OYM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
44 47anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
314 315parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
124 130anti-parallel
Strand 4
A
181 184parallel
Strand 5
A
205 208parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 365first strand
Strand 2
A
351 355anti-parallel
Strand 3
A
341 348anti-parallel
Strand 4
A
322 325anti-parallel
Strand 5
A
369 371anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 158first strand
Strand 2
B
141 147anti-parallel
Strand 3
B
124 130anti-parallel
Strand 4
B
181 184parallel
Strand 5
B
205 208parallel
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