Analysis of interatomic Contacts of Structural Units in PDB entry:
3OYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OYT entry

There are 2 chains in PDB entry 3OYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 407
B
 MSE 1GLN 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3OYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 29Right-handed alpha
Helix 2
2
A
36 43Right-handed alpha
Helix 3
3
A
57 62Right-handed alpha
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
71 89Right-handed alpha
Helix 6
6
A
91 96Right-handed alpha
Helix 7
7
A
110 122Right-handed alpha
Helix 8
8
A
125 131Right-handed alpha
Helix 9
9
A
133 139Right-handed alpha
Helix 10
10
A
141 149Right-handed alpha
Helix 11
11
A
162 164Right-handed 310
Helix 12
12
A
165 180Right-handed alpha
Helix 13
13
A
195 205Right-handed alpha
Helix 14
14
A
215 219Right-handed 310
Helix 15
15
A
244 251Right-handed alpha
Helix 16
16
A
275 287Right-handed alpha
Helix 17
17
A
303 319Right-handed alpha
Helix 18
18
A
328 333Right-handed alpha
Helix 19
19
A
335 337Right-handed 310
Helix 20
20
A
338 354Right-handed alpha
Helix 21
21
A
366 370Right-handed 310
Helix 22
22
B
18 29Right-handed alpha
Helix 23
23
B
36 43Right-handed alpha
Helix 24
24
B
57 61Right-handed 310
Helix 25
25
B
63 68Right-handed alpha
Helix 26
26
B
71 89Right-handed alpha
Helix 27
27
B
91 96Right-handed alpha
Helix 28
28
B
110 122Right-handed alpha
Helix 29
29
B
125 131Right-handed alpha
Helix 30
30
B
133 139Right-handed alpha
Helix 31
31
B
141 149Right-handed alpha
Helix 32
32
B
162 164Right-handed 310
Helix 33
33
B
165 180Right-handed alpha
Helix 34
34
B
195 205Right-handed alpha
Helix 35
35
B
215 219Right-handed 310
Helix 36
36
B
244 251Right-handed alpha
Helix 37
37
B
276 287Right-handed alpha
Helix 38
38
B
303 319Right-handed alpha
Helix 39
39
B
328 333Right-handed alpha
Helix 40
40
B
335 337Right-handed 310
Helix 41
41
B
338 354Right-handed alpha
Helix 42
42
B
366 370Right-handed 310
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There are 6 sheets in PDB entry 3OYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
295 297parallel
Strand 3
A
385 392parallel
Strand 4
A
396 403anti-parallel
Strand 5
A
256 265anti-parallel
Strand 6
A
4 12anti-parallel
Strand 7
A
235 243anti-parallel
Strand 8
A
185 192anti-parallel
Strand 9
A
100 105parallel
Strand 10
A
157 161parallel
Strand 11
B
157 161anti-parallel
Strand 12
B
100 105parallel
Strand 13
B
185 192parallel
Strand 14
B
235 243anti-parallel
Strand 15
B
10 12anti-parallel
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There are 20 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
295 297parallel
Strand 3
A
385 392parallel
Strand 4
A
396 403anti-parallel
Strand 5
A
256 265anti-parallel
Strand 6
A
4 12anti-parallel
Strand 7
A
235 243anti-parallel
Strand 8
A
185 192anti-parallel
Strand 9
A
100 105parallel
Strand 10
A
157 161parallel
Strand 11
B
157 161anti-parallel
Strand 12
B
100 105parallel
Strand 13
B
185 192parallel
Strand 14
B
235 243anti-parallel
Strand 15
B
4 6anti-parallel
Strand 16
B
256 265anti-parallel
Strand 17
B
396 403anti-parallel
Strand 18
B
385 392anti-parallel
Strand 19
B
295 297parallel
Strand 20
B
324 326parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
379 380anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
48 49anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 356first strand
Strand 2
B
379 380anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il