Analysis of interatomic Contacts of Structural Units in PDB entry:
3OZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OZF entry

There are 4 chains in PDB entry 3OZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4ALA 228
B
 VAL -5ALA 228
C
 PRO 2THR 229
D
 PRO 2THR 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3OZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 30Right-handed 310
Helix 2
2
A
33 38Right-handed 310
Helix 3
3
A
46 66Right-handed alpha
Helix 4
4
A
79 98Right-handed alpha
Helix 5
5
A
131 136Right-handed 310
Helix 6
6
A
150 161Right-handed alpha
Helix 7
7
A
162 164Right-handed 310
Helix 8
8
A
219 226Right-handed alpha
Helix 9
9
B
26 30Right-handed 310
Helix 10
10
B
33 38Right-handed 310
Helix 11
11
B
46 66Right-handed alpha
Helix 12
12
B
79 98Right-handed alpha
Helix 13
13
B
131 136Right-handed 310
Helix 14
14
B
150 161Right-handed alpha
Helix 15
15
B
162 164Right-handed 310
Helix 16
16
B
219 226Right-handed alpha
Helix 17
17
C
33 38Right-handed 310
Helix 18
18
C
46 66Right-handed alpha
Helix 19
19
C
79 98Right-handed alpha
Helix 20
20
C
131 136Right-handed 310
Helix 21
21
C
150 160Right-handed alpha
Helix 22
22
C
161 164Right-handed 310
Helix 23
23
C
219 226Right-handed alpha
Helix 24
24
D
26 30Right-handed 310
Helix 25
25
D
33 38Right-handed 310
Helix 26
26
D
46 66Right-handed alpha
Helix 27
27
D
79 98Right-handed alpha
Helix 28
28
D
131 136Right-handed 310
Helix 29
29
D
150 161Right-handed alpha
Helix 30
30
D
162 164Right-handed 310
Helix 31
31
D
219 226Right-handed alpha
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There are 8 sheets in PDB entry 3OZF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
188 193parallel
Strand 3
A
167 176parallel
Strand 4
A
139 147parallel
Strand 5
A
70 76parallel
Strand 6
A
106 117parallel
Strand 7
A
120 128anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
215 218anti-parallel
Strand 3
A
198 199anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
188 193parallel
Strand 3
B
167 176parallel
Strand 4
B
139 147parallel
Strand 5
B
70 76parallel
Strand 6
B
106 117parallel
Strand 7
B
120 129anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
198 199anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
C
188 193parallel
Strand 3
C
167 176parallel
Strand 4
C
139 147parallel
Strand 5
C
70 76parallel
Strand 6
C
106 117parallel
Strand 7
C
120 129anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 45first strand
Strand 2
C
215 218anti-parallel
Strand 3
C
198 199anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 18first strand
Strand 2
D
188 193parallel
Strand 3
D
167 176parallel
Strand 4
D
139 147parallel
Strand 5
D
70 76parallel
Strand 6
D
106 117parallel
Strand 7
D
120 128anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 45first strand
Strand 2
D
215 218anti-parallel
Strand 3
D
198 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il