Analysis of interatomic Contacts of Structural Units in PDB entry:
3P01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P01 entry

There are 3 chains in PDB entry 3P01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 137SER 314
B
 ALA 140SER 314
C
 LYS 147LEU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3P01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
142 173Right-handed alpha
Helix 2
2
A
176 178Right-handed 310
Helix 3
3
A
179 192Right-handed alpha
Helix 4
4
A
222 225Right-handed 310
Helix 5
5
A
226 236Right-handed alpha
Helix 6
6
A
243 246Right-handed 310
Helix 7
7
A
247 252Right-handed alpha
Helix 8
8
A
253 260Right-handed alpha
Helix 9
9
A
290 312Right-handed alpha
Helix 10
10
B
148 173Right-handed alpha
Helix 11
11
B
175 191Right-handed alpha
Helix 12
12
B
222 225Right-handed 310
Helix 13
13
B
226 235Right-handed alpha
Helix 14
14
B
247 252Right-handed alpha
Helix 15
15
B
290 312Right-handed alpha
Helix 16
16
C
147 171Right-handed alpha
Helix 17
17
C
175 191Right-handed alpha
Helix 18
18
C
222 225Right-handed 310
Helix 19
19
C
226 236Right-handed alpha
Helix 20
20
C
253 258Right-handed alpha
Helix 21
21
C
290 312Right-handed alpha
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There are 3 sheets in PDB entry 3P01. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 214first strand
Strand 2
A
195 202anti-parallel
Strand 3
A
274 283anti-parallel
Strand 4
A
263 271anti-parallel
Strand 5
A
239 241anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 213first strand
Strand 2
B
195 202anti-parallel
Strand 3
B
274 283anti-parallel
Strand 4
B
263 271anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 214first strand
Strand 2
C
195 202anti-parallel
Strand 3
C
274 283anti-parallel
Strand 4
C
263 271anti-parallel
Strand 5
C
239 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il