Analysis of interatomic Contacts of Structural Units in PDB entry:
3P0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P0F entry

There is 1 chain in PDB entry 3P0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 22GLY 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3P0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
41 44Right-handed 310
Helix 3
3
A
51 57Right-handed alpha
Helix 4
4
A
67 83Right-handed alpha
Helix 5
5
A
117 135Right-handed alpha
Helix 6
6
A
189 202Right-handed alpha
Helix 7
7
A
220 224Right-handed 310
Helix 8
8
A
234 249Right-handed alpha
Helix 9
9
A
256 267Right-handed alpha
Helix 10
10
A
290 299Right-handed alpha
Helix 11
11
A
299 314Right-handed alpha
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There are 3 sheets in PDB entry 3P0F. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
45 46anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
109 113anti-parallel
Strand 3
A
61 65parallel
Strand 4
A
141 150parallel
Strand 5
A
270 280parallel
Strand 6
A
158 165anti-parallel
Strand 7
A
208 215parallel
Strand 8
A
250 254parallel
Strand 9
A
141 150anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
180 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il