Analysis of interatomic Contacts of Structural Units in PDB entry:
3P16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3P16 entry

There are 6 chains in PDB entry 3P16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	LEU 400
B	LEU 13	LEU 400
C	LEU 13	LEU 400
D	LEU 13	LEU 400
E	LEU 13	LEU 400
F	LEU 13	LEU 400

There are 57 helices in PDB entry 3P16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	30	Right-handed alpha
Helix 2	2	A	39	42	Right-handed 310
Helix 3	3	A	83	93	Right-handed alpha
Helix 4	4	A	140	152	Right-handed alpha
Helix 5	5	A	208	217	Right-handed alpha
Helix 6	6	A	260	264	Right-handed 310
Helix 7	7	A	277	289	Right-handed alpha
Helix 8	8	A	336	347	Right-handed alpha
Helix 9	9	B	18	31	Right-handed alpha
Helix 10	10	B	39	42	Right-handed 310
Helix 11	11	B	83	93	Right-handed alpha
Helix 12	12	B	141	153	Right-handed alpha
Helix 13	13	B	161	165	Right-handed alpha
Helix 14	14	B	208	217	Right-handed alpha
Helix 15	15	B	260	265	Right-handed alpha
Helix 16	16	B	277	289	Right-handed alpha
Helix 17	17	B	336	347	Right-handed alpha
Helix 18	18	C	19	31	Right-handed alpha
Helix 19	19	C	39	42	Right-handed 310
Helix 20	20	C	83	93	Right-handed alpha
Helix 21	21	C	122	126	Right-handed 310
Helix 22	22	C	140	153	Right-handed alpha
Helix 23	23	C	161	164	Right-handed 310
Helix 24	24	C	208	217	Right-handed alpha
Helix 25	25	C	260	265	Right-handed alpha
Helix 26	26	C	277	288	Right-handed alpha
Helix 27	27	C	289	291	Right-handed 310
Helix 28	28	C	336	347	Right-handed alpha
Helix 29	29	D	19	31	Right-handed alpha
Helix 30	30	D	39	43	Right-handed alpha
Helix 31	31	D	83	92	Right-handed alpha
Helix 32	32	D	122	126	Right-handed 310
Helix 33	33	D	141	153	Right-handed alpha
Helix 34	34	D	161	164	Right-handed 310
Helix 35	35	D	208	217	Right-handed alpha
Helix 36	36	D	234	237	Right-handed 310
Helix 37	37	D	260	265	Right-handed 310
Helix 38	38	D	277	288	Right-handed alpha
Helix 39	39	D	289	295	Right-handed 310
Helix 40	40	D	336	347	Right-handed alpha
Helix 41	41	E	18	30	Right-handed alpha
Helix 42	42	E	83	93	Right-handed alpha
Helix 43	43	E	140	153	Right-handed alpha
Helix 44	44	E	208	217	Right-handed alpha
Helix 45	45	E	277	288	Right-handed alpha
Helix 46	46	E	289	290	Right-handed 310
Helix 47	47	E	291	295	Right-handed 310
Helix 48	48	E	336	345	Right-handed alpha
Helix 49	49	F	18	30	Right-handed alpha
Helix 50	50	F	39	42	Right-handed 310
Helix 51	51	F	83	93	Right-handed alpha
Helix 52	52	F	122	126	Right-handed 310
Helix 53	53	F	141	153	Right-handed alpha
Helix 54	54	F	208	216	Right-handed alpha
Helix 55	55	F	261	265	Right-handed 310
Helix 56	56	F	277	288	Right-handed alpha
Helix 57	57	F	336	347	Right-handed alpha

There are 19 sheets in PDB entry 3P16. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	97	103	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	114	119	anti-parallel
Strand 5	B	316	323	anti-parallel
Strand 6	B	305	312	anti-parallel
Strand 7	B	297	301	anti-parallel
Strand 8	B	332	335	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	82	first strand
Strand 2	A	44	49	anti-parallel
Strand 3	A	53	58	anti-parallel
Strand 4	A	65	70	anti-parallel
Strand 5	A	247	250	anti-parallel
Strand 6	A	241	243	anti-parallel
Strand 7	A	224	227	anti-parallel
Strand 8	A	135	139	anti-parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	207	first strand
Strand 2	A	166	172	anti-parallel
Strand 3	A	175	181	anti-parallel
Strand 4	A	185	192	anti-parallel
Strand 5	A	391	395	anti-parallel
Strand 6	A	363	368	anti-parallel
Strand 7	A	351	356	anti-parallel
Strand 8	A	271	276	anti-parallel
Strand 9	A	325	328	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	335	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	305	311	anti-parallel
Strand 4	A	317	323	anti-parallel
Strand 5	B	114	119	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	98	103	anti-parallel
Strand 8	B	14	17	anti-parallel
Strand 9	B	72	75	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	82	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	54	58	anti-parallel
Strand 4	B	63	69	anti-parallel
Strand 5	B	247	252	anti-parallel
Strand 6	B	239	243	anti-parallel
Strand 7	B	223	227	anti-parallel
Strand 8	B	137	140	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	207	first strand
Strand 2	B	166	172	anti-parallel
Strand 3	B	175	182	anti-parallel
Strand 4	B	185	192	anti-parallel
Strand 5	B	391	395	anti-parallel
Strand 6	B	363	367	anti-parallel
Strand 7	B	351	356	anti-parallel
Strand 8	B	271	276	anti-parallel
Strand 9	B	325	327	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	14	18	anti-parallel
Strand 3	C	97	103	anti-parallel
Strand 4	C	106	111	anti-parallel
Strand 5	C	114	119	anti-parallel
Strand 6	D	316	323	anti-parallel
Strand 7	D	305	312	anti-parallel
Strand 8	D	297	302	anti-parallel
Strand 9	D	331	335	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	82	first strand
Strand 2	C	44	49	anti-parallel
Strand 3	C	53	58	anti-parallel
Strand 4	C	63	70	anti-parallel
Strand 5	C	247	252	anti-parallel
Strand 6	C	239	243	anti-parallel
Strand 7	C	224	227	anti-parallel
Strand 8	C	135	139	anti-parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	207	first strand
Strand 2	C	166	172	anti-parallel
Strand 3	C	175	182	anti-parallel
Strand 4	C	185	192	anti-parallel
Strand 5	C	391	395	anti-parallel
Strand 6	C	363	368	anti-parallel
Strand 7	C	351	356	anti-parallel
Strand 8	C	271	276	anti-parallel
Strand 9	C	325	328	anti-parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	335	first strand
Strand 2	C	297	301	anti-parallel
Strand 3	C	305	310	anti-parallel
Strand 4	C	317	323	anti-parallel
Strand 5	D	114	119	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	97	103	anti-parallel
Strand 8	D	14	18	anti-parallel
Strand 9	D	72	75	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	82	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	53	59	anti-parallel
Strand 4	D	63	70	anti-parallel
Strand 5	D	248	252	anti-parallel
Strand 6	D	239	243	anti-parallel
Strand 7	D	223	227	anti-parallel
Strand 8	D	137	140	anti-parallel
Strand 9	D	194	195	anti-parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	207	first strand
Strand 2	D	166	172	anti-parallel
Strand 3	D	175	181	anti-parallel
Strand 4	D	185	192	anti-parallel
Strand 5	D	391	395	anti-parallel
Strand 6	D	363	367	anti-parallel
Strand 7	D	351	356	anti-parallel
Strand 8	D	271	276	anti-parallel
Strand 9	D	325	327	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	75	first strand
Strand 2	E	14	17	anti-parallel
Strand 3	E	98	103	anti-parallel
Strand 4	E	106	111	anti-parallel
Strand 5	E	114	119	anti-parallel
Strand 6	F	317	323	anti-parallel
Strand 7	F	305	310	anti-parallel
Strand 8	F	297	302	anti-parallel
Strand 9	F	331	335	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	82	first strand
Strand 2	E	44	48	anti-parallel
Strand 3	E	54	58	anti-parallel
Strand 4	E	65	69	anti-parallel
Strand 5	E	247	249	anti-parallel
Strand 6	E	241	243	anti-parallel
Strand 7	E	224	227	anti-parallel
Strand 8	E	135	139	anti-parallel

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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	207	first strand
Strand 2	E	166	172	anti-parallel
Strand 3	E	175	181	anti-parallel
Strand 4	E	185	192	anti-parallel
Strand 5	E	391	395	anti-parallel
Strand 6	E	363	367	anti-parallel
Strand 7	E	351	356	anti-parallel
Strand 8	E	271	276	anti-parallel
Strand 9	E	325	327	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	301	first strand
Strand 2	E	331	335	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	311	first strand
Strand 2	E	317	323	anti-parallel
Strand 3	F	114	119	anti-parallel
Strand 4	F	106	111	anti-parallel
Strand 5	F	98	103	anti-parallel
Strand 6	F	14	17	anti-parallel
Strand 7	F	72	75	anti-parallel

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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	82	first strand
Strand 2	F	44	48	anti-parallel
Strand 3	F	54	58	anti-parallel
Strand 4	F	63	69	anti-parallel
Strand 5	F	247	252	anti-parallel
Strand 6	F	239	243	anti-parallel
Strand 7	F	223	227	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	194	195	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	207	first strand
Strand 2	F	166	172	anti-parallel
Strand 3	F	175	182	anti-parallel
Strand 4	F	185	192	anti-parallel
Strand 5	F	391	395	anti-parallel
Strand 6	F	363	368	anti-parallel
Strand 7	F	351	356	anti-parallel
Strand 8	F	271	276	anti-parallel
Strand 9	F	325	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3P16

Analysis of interatomic Contacts of Structural Units in PDB entry:
3P16