Analysis of interatomic Contacts of Structural Units in PDB entry:
3P19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P19 entry

There are 4 chains in PDB entry 3P19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 239
B
 LYS 2GLN 237
C
 LYS 2GLN 237
D
 LYS 2PRO 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 3P19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
35 41Right-handed alpha
Helix 3
3
A
56 72Right-handed alpha
Helix 4
4
A
93 105Right-handed alpha
Helix 5
5
A
105 123Right-handed alpha
Helix 6
6
A
132 136Right-handed 310
Helix 7
7
A
142 164Right-handed alpha
Helix 8
8
A
165 167Right-handed 310
Helix 9
9
A
181 186Right-handed 310
Helix 10
10
A
188 202Right-handed alpha
Helix 11
11
A
207 221Right-handed alpha
Helix 12
12
B
12 25Right-handed alpha
Helix 13
13
B
35 43Right-handed alpha
Helix 14
14
B
56 72Right-handed alpha
Helix 15
15
B
93 105Right-handed alpha
Helix 16
16
B
105 123Right-handed alpha
Helix 17
17
B
132 136Right-handed 310
Helix 18
18
B
142 164Right-handed alpha
Helix 19
19
B
165 167Right-handed 310
Helix 20
20
B
208 221Right-handed alpha
Helix 21
21
C
12 25Right-handed alpha
Helix 22
22
C
35 43Right-handed alpha
Helix 23
23
C
56 72Right-handed alpha
Helix 24
24
C
93 105Right-handed alpha
Helix 25
25
C
105 123Right-handed alpha
Helix 26
26
C
132 136Right-handed 310
Helix 27
27
C
142 164Right-handed alpha
Helix 28
28
C
165 167Right-handed 310
Helix 29
29
C
207 220Right-handed alpha
Helix 30
30
D
12 25Right-handed alpha
Helix 31
31
D
35 41Right-handed alpha
Helix 32
32
D
56 72Right-handed alpha
Helix 33
33
D
93 105Right-handed alpha
Helix 34
34
D
105 123Right-handed alpha
Helix 35
35
D
132 136Right-handed 310
Helix 36
36
D
142 164Right-handed alpha
Helix 37
37
D
165 167Right-handed 310
Helix 38
38
D
181 186Right-handed 310
Helix 39
39
D
188 202Right-handed alpha
Helix 40
40
D
207 221Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3P19. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
29 33parallel
Strand 3
A
4 8parallel
Strand 4
A
74 79parallel
Strand 5
A
126 130parallel
Strand 6
A
169 175parallel
Strand 7
A
225 234parallel
Strand 8
C
225 234anti-parallel
Strand 9
C
169 175parallel
Strand 10
C
126 130parallel
Strand 11
C
74 79parallel
Strand 12
C
4 8parallel
Strand 13
C
29 33parallel
Strand 14
C
47 51parallel
Back to list of sheets
Back to top of page

There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 51first strand
Strand 2
B
29 33parallel
Strand 3
B
4 8parallel
Strand 4
B
74 79parallel
Strand 5
B
126 130parallel
Strand 6
B
169 175parallel
Strand 7
B
225 234parallel
Strand 8
D
225 234anti-parallel
Strand 9
D
169 175parallel
Strand 10
D
126 130parallel
Strand 11
D
76 79parallel
Strand 12
D
5 8parallel
Strand 13
D
29 33parallel
Strand 14
D
47 51parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
206 207parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il