Analysis of interatomic Contacts of Structural Units in PDB entry:
3P1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P1J entry

There are 4 chains in PDB entry 3P1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21SER 225
B
 SER 21ARG 224
C
 SER 21LYS 226
D
 SER 21SER 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 3P1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
79 84Right-handed 310
Helix 3
3
A
88 103Right-handed alpha
Helix 4
4
A
119 134Right-handed alpha
Helix 5
5
A
135 139Right-handed 310
Helix 6
6
A
154 163Right-handed alpha
Helix 7
7
A
165 175Right-handed alpha
Helix 8
8
A
188 209Right-handed alpha
Helix 9
9
A
216 225Right-handed alpha
Helix 10
10
B
31 44Right-handed alpha
Helix 11
11
B
79 84Right-handed 310
Helix 12
12
B
88 103Right-handed alpha
Helix 13
13
B
119 134Right-handed alpha
Helix 14
14
B
135 139Right-handed 310
Helix 15
15
B
152 163Right-handed alpha
Helix 16
16
B
165 175Right-handed alpha
Helix 17
17
B
190 209Right-handed alpha
Helix 18
18
B
216 224Right-handed alpha
Helix 19
19
C
34 44Right-handed alpha
Helix 20
20
C
79 84Right-handed 310
Helix 21
21
C
88 103Right-handed alpha
Helix 22
22
C
119 134Right-handed alpha
Helix 23
23
C
135 139Right-handed 310
Helix 24
24
C
152 163Right-handed alpha
Helix 25
25
C
165 175Right-handed alpha
Helix 26
26
C
188 209Right-handed alpha
Helix 27
27
C
216 226Right-handed alpha
Helix 28
28
D
34 44Right-handed alpha
Helix 29
29
D
79 84Right-handed 310
Helix 30
30
D
88 103Right-handed alpha
Helix 31
31
D
119 134Right-handed alpha
Helix 32
32
D
135 139Right-handed 310
Helix 33
33
D
155 163Right-handed alpha
Helix 34
34
D
165 175Right-handed alpha
Helix 35
35
D
188 209Right-handed alpha
Helix 36
36
D
216 225Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3P1J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
22 28parallel
Strand 4
A
108 114parallel
Strand 5
A
141 147parallel
Strand 6
A
179 183parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
73 77anti-parallel
Strand 3
B
23 29parallel
Strand 4
B
108 114parallel
Strand 5
B
141 147parallel
Strand 6
B
179 183parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
22 28parallel
Strand 4
C
108 114parallel
Strand 5
C
141 147parallel
Strand 6
C
179 183parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 68first strand
Strand 2
D
71 77anti-parallel
Strand 3
D
23 28parallel
Strand 4
D
108 114parallel
Strand 5
D
141 147parallel
Strand 6
D
179 183parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il