Analysis of interatomic Contacts of Structural Units in PDB entry:
3P1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P1T entry

There are 4 chains in PDB entry 3P1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13ASP 334
B
 ALA 17HIS 335
C
 ALA 14ASP 334
D
 ALA 17LEU 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 3P1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
42 44Right-handed 310
Helix 3
3
A
50 64Right-handed alpha
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
74 87Right-handed alpha
Helix 6
6
A
100 107Right-handed alpha
Helix 7
7
A
125 130Right-handed alpha
Helix 8
8
A
152 163Right-handed alpha
Helix 9
9
A
172 176Right-handed 310
Helix 10
10
A
212 221Right-handed alpha
Helix 11
11
A
229 241Right-handed alpha
Helix 12
12
A
242 267Right-handed alpha
Helix 13
13
A
286 296Right-handed alpha
Helix 14
14
A
304 307Right-handed 310
Helix 15
15
A
318 333Right-handed alpha
Helix 16
16
B
30 41Right-handed alpha
Helix 17
17
B
42 44Right-handed 310
Helix 18
18
B
50 63Right-handed alpha
Helix 19
19
B
66 68Right-handed 310
Helix 20
20
B
74 87Right-handed alpha
Helix 21
21
B
100 110Right-handed alpha
Helix 22
22
B
125 130Right-handed alpha
Helix 23
23
B
152 163Right-handed alpha
Helix 24
24
B
172 176Right-handed 310
Helix 25
25
B
212 221Right-handed alpha
Helix 26
26
B
229 241Right-handed alpha
Helix 27
27
B
242 267Right-handed alpha
Helix 28
28
B
286 296Right-handed alpha
Helix 29
29
B
304 307Right-handed 310
Helix 30
30
B
318 333Right-handed alpha
Helix 31
31
C
30 41Right-handed alpha
Helix 32
32
C
42 44Right-handed 310
Helix 33
33
C
50 64Right-handed alpha
Helix 34
34
C
66 68Right-handed 310
Helix 35
35
C
74 87Right-handed alpha
Helix 36
36
C
100 107Right-handed alpha
Helix 37
37
C
125 130Right-handed alpha
Helix 38
38
C
152 163Right-handed alpha
Helix 39
39
C
172 176Right-handed 310
Helix 40
40
C
201 205Right-handed 310
Helix 41
41
C
212 223Right-handed alpha
Helix 42
42
C
229 241Right-handed alpha
Helix 43
43
C
242 267Right-handed alpha
Helix 44
44
C
286 296Right-handed alpha
Helix 45
45
C
304 307Right-handed 310
Helix 46
46
C
318 333Right-handed alpha
Helix 47
47
D
30 41Right-handed alpha
Helix 48
48
D
42 44Right-handed 310
Helix 49
49
D
50 64Right-handed alpha
Helix 50
50
D
66 68Right-handed 310
Helix 51
51
D
74 87Right-handed alpha
Helix 52
52
D
100 110Right-handed alpha
Helix 53
53
D
125 130Right-handed alpha
Helix 54
54
D
152 163Right-handed alpha
Helix 55
55
D
172 176Right-handed 310
Helix 56
56
D
201 205Right-handed 310
Helix 57
57
D
212 221Right-handed alpha
Helix 58
58
D
229 241Right-handed alpha
Helix 59
59
D
242 267Right-handed alpha
Helix 60
60
D
286 296Right-handed alpha
Helix 61
61
D
304 307Right-handed 310
Helix 62
62
D
318 333Right-handed alpha
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There are 10 sheets in PDB entry 3P1T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
298 299parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
207 210anti-parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
165 169parallel
Strand 5
A
136 141parallel
Strand 6
A
91 95parallel
Strand 7
A
112 116parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 282first strand
Strand 2
A
311 315anti-parallel
Strand 3
A
301 302anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
298 302parallel
Strand 3
B
311 315anti-parallel
Strand 4
B
278 282anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
207 210anti-parallel
Strand 3
B
189 194anti-parallel
Strand 4
B
165 169parallel
Strand 5
B
136 141parallel
Strand 6
B
91 95parallel
Strand 7
B
112 116parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
298 299parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
207 210anti-parallel
Strand 3
C
189 194anti-parallel
Strand 4
C
165 169parallel
Strand 5
C
136 141parallel
Strand 6
C
91 95parallel
Strand 7
C
112 116parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 282first strand
Strand 2
C
311 315anti-parallel
Strand 3
C
301 302anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 20first strand
Strand 2
D
298 302parallel
Strand 3
D
311 315anti-parallel
Strand 4
D
278 282anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 73first strand
Strand 2
D
207 210anti-parallel
Strand 3
D
189 194anti-parallel
Strand 4
D
165 169parallel
Strand 5
D
136 141parallel
Strand 6
D
91 95parallel
Strand 7
D
112 116parallel
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