Analysis of interatomic Contacts of Structural Units in PDB entry:
3P1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P1V entry

There are 2 chains in PDB entry 3P1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20PRO 425
B
 GLY 0PRO 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3P1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 24Right-handed 310
Helix 2
2
A
93 99Right-handed alpha
Helix 3
3
A
100 106Right-handed 310
Helix 4
4
A
186 188Right-handed 310
Helix 5
5
A
189 205Right-handed alpha
Helix 6
6
A
213 215Right-handed 310
Helix 7
7
A
233 237Right-handed 310
Helix 8
8
A
249 253Right-handed 310
Helix 9
9
A
261 270Right-handed alpha
Helix 10
10
A
304 317Right-handed alpha
Helix 11
11
A
351 355Right-handed 310
Helix 12
12
A
356 360Right-handed 310
Helix 13
13
A
369 373Right-handed 310
Helix 14
14
A
409 424Right-handed alpha
Helix 15
15
B
21 24Right-handed 310
Helix 16
16
B
93 99Right-handed alpha
Helix 17
17
B
100 106Right-handed 310
Helix 18
18
B
186 188Right-handed 310
Helix 19
19
B
189 205Right-handed alpha
Helix 20
20
B
213 215Right-handed 310
Helix 21
21
B
233 237Right-handed 310
Helix 22
22
B
249 253Right-handed 310
Helix 23
23
B
261 270Right-handed alpha
Helix 24
24
B
304 317Right-handed alpha
Helix 25
25
B
351 355Right-handed 310
Helix 26
26
B
356 360Right-handed 310
Helix 27
27
B
369 373Right-handed 310
Helix 28
28
B
409 424Right-handed alpha
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There are 8 sheets in PDB entry 3P1V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 120first strand
Strand 2
A
26 39anti-parallel
Strand 3
A
44 54anti-parallel
Strand 4
A
153 154parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
124 131anti-parallel
Strand 4
A
137 145anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 168first strand
Strand 2
A
217 222anti-parallel
Strand 3
A
176 183parallel
Strand 4
A
276 281parallel
Strand 5
A
295 299parallel
Strand 6
A
288 291anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
387 393anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 120first strand
Strand 2
B
26 39anti-parallel
Strand 3
B
44 54anti-parallel
Strand 4
B
153 154parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 91first strand
Strand 2
B
73 79anti-parallel
Strand 3
B
124 131anti-parallel
Strand 4
B
137 145anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 168first strand
Strand 2
B
217 222anti-parallel
Strand 3
B
176 183parallel
Strand 4
B
276 281parallel
Strand 5
B
295 299parallel
Strand 6
B
288 291anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 384first strand
Strand 2
B
387 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il