Analysis of interatomic Contacts of Structural Units in PDB entry:
3P2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P2F entry

There is 1 chain in PDB entry 3P2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 3P2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 28Right-handed alpha
Helix 2
2
A
77 83Right-handed alpha
Helix 3
3
A
84 87Right-handed 310
Helix 4
4
A
121 135Right-handed alpha
Helix 5
5
A
147 157Right-handed alpha
Helix 6
6
A
182 189Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3P2F. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
140 146parallel
Strand 6
A
172 180anti-parallel
Strand 7
A
160 162anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
53 58anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
99 107anti-parallel
Strand 5
A
140 146parallel
Strand 6
A
172 180anti-parallel
Strand 7
A
167 169anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il