Analysis of interatomic Contacts of Structural Units in PDB entry:
3P3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P3F entry

There are 6 chains in PDB entry 3P3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 136
B
 MET 5PRO 137
C
 VAL 7PRO 137
D
 MET 5GLN 134
E
 ARG 10ALA 138
F
 MET 5PRO 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3P3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
41 58Right-handed alpha
Helix 4
4
A
59 61Right-handed 310
Helix 5
5
A
125 133Right-handed alpha
Helix 6
6
B
18 21Right-handed 310
Helix 7
7
B
22 27Right-handed alpha
Helix 8
8
B
30 34Right-handed 310
Helix 9
9
B
41 58Right-handed alpha
Helix 10
10
B
59 61Right-handed 310
Helix 11
11
B
125 136Right-handed alpha
Helix 12
12
C
18 21Right-handed 310
Helix 13
13
C
22 27Right-handed alpha
Helix 14
14
C
30 34Right-handed 310
Helix 15
15
C
41 58Right-handed alpha
Helix 16
16
C
125 134Right-handed alpha
Helix 17
17
D
18 21Right-handed 310
Helix 18
18
D
22 27Right-handed alpha
Helix 19
19
D
30 34Right-handed 310
Helix 20
20
D
41 58Right-handed alpha
Helix 21
21
D
59 61Right-handed 310
Helix 22
22
D
125 130Right-handed alpha
Helix 23
23
E
18 21Right-handed 310
Helix 24
24
E
22 27Right-handed alpha
Helix 25
25
E
30 34Right-handed 310
Helix 26
26
E
41 58Right-handed alpha
Helix 27
27
E
59 61Right-handed 310
Helix 28
28
E
125 134Right-handed alpha
Helix 29
29
F
18 21Right-handed 310
Helix 30
30
F
22 27Right-handed alpha
Helix 31
31
F
41 58Right-handed alpha
Helix 32
32
F
59 61Right-handed 310
Helix 33
33
F
125 135Right-handed alpha
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There are 3 sheets in PDB entry 3P3F. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
85 96anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
112 124anti-parallel
Strand 5
A
65 75anti-parallel
Strand 6
B
65 75anti-parallel
Strand 7
B
112 124anti-parallel
Strand 8
B
99 107anti-parallel
Strand 9
B
85 96anti-parallel
Strand 10
B
10 16anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 16first strand
Strand 2
C
85 95anti-parallel
Strand 3
C
99 107anti-parallel
Strand 4
C
112 124anti-parallel
Strand 5
C
65 75anti-parallel
Strand 6
D
65 75anti-parallel
Strand 7
D
112 124anti-parallel
Strand 8
D
99 107anti-parallel
Strand 9
D
85 96anti-parallel
Strand 10
D
10 16anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 16first strand
Strand 2
E
85 92anti-parallel
Strand 3
E
99 107anti-parallel
Strand 4
E
112 124anti-parallel
Strand 5
E
65 75anti-parallel
Strand 6
F
65 75anti-parallel
Strand 7
F
112 124anti-parallel
Strand 8
F
99 107anti-parallel
Strand 9
F
85 96anti-parallel
Strand 10
F
10 16anti-parallel
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