Analysis of interatomic Contacts of Structural Units in PDB entry:
3P41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P41 entry

There are 2 chains in PDB entry 3P41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2ALA 107
A
 ALA 109ARG 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3P41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 19Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
28 40Right-handed alpha
Helix 4
4
A
45 58Right-handed alpha
Helix 5
5
A
61 64Right-handed 310
Helix 6
6
A
65 85Right-handed alpha
Helix 7
7
A
99 104Right-handed alpha
Helix 8
8
A
105 126Right-handed alpha
Helix 9
9
A
133 149Right-handed alpha
Helix 10
10
A
152 163Right-handed alpha
Helix 11
11
A
169 181Right-handed alpha
Helix 12
12
A
181 196Right-handed alpha
Helix 13
13
A
200 231Right-handed alpha
Helix 14
14
A
248 254Right-handed alpha
Helix 15
15
A
254 273Right-handed alpha
Helix 16
16
A
277 279Right-handed 310
Helix 17
17
A
280 293Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3P41.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
97 98anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il