Analysis of interatomic Contacts of Structural Units in PDB entry:
3P5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P5J entry

There are 3 chains in PDB entry 3P5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10LEU 299
B
 ALA 11LEU 231
C
 ILE 14GLN 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3P5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
56 62Right-handed alpha
Helix 3
3
A
72 86Right-handed alpha
Helix 4
4
A
98 107Right-handed alpha
Helix 5
5
A
113 132Right-handed alpha
Helix 6
6
A
147 158Right-handed alpha
Helix 7
7
A
168 173Right-handed alpha
Helix 8
8
A
173 201Right-handed alpha
Helix 9
9
A
214 223Right-handed alpha
Helix 10
10
A
239 250Right-handed alpha
Helix 11
11
A
284 292Right-handed alpha
Helix 12
12
B
22 25Right-handed 310
Helix 13
13
B
92 98Right-handed alpha
Helix 14
14
B
99 101Right-handed 310
Helix 15
15
B
124 130Right-handed alpha
Helix 16
16
B
133 139Right-handed alpha
Helix 17
17
B
156 178Right-handed alpha
Helix 18
18
B
204 215Right-handed alpha
Helix 19
19
B
216 221Right-handed 310
Helix 20
20
C
17 23Right-handed alpha
Helix 21
21
C
43 48Right-handed alpha
Helix 22
22
C
49 52Right-handed 310
Helix 23
23
C
144 150Right-handed alpha
Helix 24
24
C
151 160Right-handed alpha
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There are 5 sheets in PDB entry 3P5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
29 36anti-parallel
Strand 5
A
136 142parallel
Strand 6
A
162 166parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
C
35 36anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
49 54anti-parallel
Strand 4
B
35 40anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
85 90anti-parallel
Strand 4
B
15 20parallel
Strand 5
C
79 85anti-parallel
Strand 6
C
123 128anti-parallel
Strand 7
C
25 26parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 41first strand
Strand 2
B
78 81anti-parallel
Strand 3
B
72 75anti-parallel
Strand 4
C
29 32anti-parallel
Strand 5
C
130 136parallel
Strand 6
C
66 74anti-parallel
Strand 7
C
59 63anti-parallel
Strand 8
C
53 54anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il