Analysis of interatomic Contacts of Structural Units in PDB entry:
3P5T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3P5T entry

There are 12 chains in PDB entry 3P5T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	GLU 229
B	GLU 34	HIS 231
C	GLU 34	GLU 229
D	GLU 34	HIS 231
E	GLU 34	LEU 228
F	GLU 34	HIS 230
L	LEU 83	SER 159
M	ILE 81	LYS 161
N	ARG 80	SER 159
O	ARG 80	ASN 160
P	ILE 81	SER 159
Q	ALA 82	LYS 161

There are 57 helices in PDB entry 3P5T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	41	43	Right-handed 310
Helix 2	2	A	59	75	Right-handed alpha
Helix 3	3	A	116	130	Right-handed alpha
Helix 4	4	A	198	202	Right-handed alpha
Helix 5	5	A	204	213	Right-handed alpha
Helix 6	6	A	214	220	Right-handed alpha
Helix 7	7	B	41	43	Right-handed 310
Helix 8	8	B	59	75	Right-handed alpha
Helix 9	9	B	116	130	Right-handed alpha
Helix 10	10	B	198	202	Right-handed alpha
Helix 11	11	B	204	214	Right-handed alpha
Helix 12	12	B	214	220	Right-handed alpha
Helix 13	13	C	41	43	Right-handed 310
Helix 14	14	C	59	75	Right-handed alpha
Helix 15	15	C	116	130	Right-handed alpha
Helix 16	16	C	198	202	Right-handed alpha
Helix 17	17	C	204	214	Right-handed alpha
Helix 18	18	C	214	220	Right-handed alpha
Helix 19	19	D	41	43	Right-handed 310
Helix 20	20	D	60	75	Right-handed alpha
Helix 21	21	D	116	130	Right-handed alpha
Helix 22	22	D	198	202	Right-handed alpha
Helix 23	23	D	204	213	Right-handed alpha
Helix 24	24	D	214	220	Right-handed alpha
Helix 25	25	E	41	45	Right-handed 310
Helix 26	26	E	59	74	Right-handed alpha
Helix 27	27	E	116	130	Right-handed alpha
Helix 28	28	E	198	202	Right-handed alpha
Helix 29	29	E	204	209	Right-handed alpha
Helix 30	30	E	211	213	Right-handed 310
Helix 31	31	E	214	220	Right-handed alpha
Helix 32	32	F	41	43	Right-handed 310
Helix 33	33	F	59	75	Right-handed alpha
Helix 34	34	F	116	129	Right-handed alpha
Helix 35	35	F	198	202	Right-handed alpha
Helix 36	36	F	204	209	Right-handed alpha
Helix 37	37	F	209	214	Right-handed alpha
Helix 38	38	F	214	219	Right-handed alpha
Helix 39	39	F	220	222	Right-handed 310
Helix 40	40	L	93	103	Right-handed alpha
Helix 41	41	L	133	144	Right-handed alpha
Helix 42	42	L	145	147	Right-handed 310
Helix 43	43	M	93	103	Right-handed alpha
Helix 44	44	M	133	144	Right-handed alpha
Helix 45	45	M	145	147	Right-handed 310
Helix 46	46	N	93	103	Right-handed alpha
Helix 47	47	N	133	144	Right-handed alpha
Helix 48	48	N	145	147	Right-handed 310
Helix 49	49	O	93	104	Right-handed alpha
Helix 50	50	O	133	144	Right-handed alpha
Helix 51	51	O	145	147	Right-handed 310
Helix 52	52	P	93	103	Right-handed alpha
Helix 53	53	P	133	144	Right-handed alpha
Helix 54	54	P	145	147	Right-handed 310
Helix 55	55	Q	93	103	Right-handed alpha
Helix 56	56	Q	133	144	Right-handed alpha
Helix 57	57	Q	145	147	Right-handed 310

There are 31 sheets in PDB entry 3P5T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	223	226	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	183	188	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	91	99	anti-parallel
Strand 3	A	77	88	anti-parallel
Strand 4	A	170	178	parallel
Strand 5	A	140	150	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	77	88	anti-parallel
Strand 3	A	91	99	anti-parallel
Strand 4	A	192	197	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	223	226	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	183	188	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	91	99	anti-parallel
Strand 3	B	77	88	anti-parallel
Strand 4	B	170	178	parallel
Strand 5	B	140	150	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	77	88	anti-parallel
Strand 3	B	91	99	anti-parallel
Strand 4	B	192	197	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	223	226	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	183	184	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	187	188	parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	92	99	anti-parallel
Strand 3	C	77	87	anti-parallel
Strand 4	C	170	178	parallel
Strand 5	C	140	150	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	110	first strand
Strand 2	C	77	87	anti-parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	192	197	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	223	226	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	183	188	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	91	99	anti-parallel
Strand 3	D	77	88	anti-parallel
Strand 4	D	170	178	parallel
Strand 5	D	140	150	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	110	first strand
Strand 2	D	77	88	anti-parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	192	197	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	39	first strand
Strand 2	E	223	226	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	50	first strand
Strand 2	E	184	188	parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	105	first strand
Strand 2	E	91	99	anti-parallel
Strand 3	E	77	88	anti-parallel
Strand 4	E	170	178	parallel
Strand 5	E	140	150	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	110	first strand
Strand 2	E	77	88	anti-parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	192	197	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	39	first strand
Strand 2	F	223	226	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	183	188	parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	105	first strand
Strand 2	F	91	99	anti-parallel
Strand 3	F	77	88	anti-parallel
Strand 4	F	170	178	parallel
Strand 5	F	140	150	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	110	first strand
Strand 2	F	77	88	anti-parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	192	197	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	112	116	first strand
Strand 2	L	123	129	anti-parallel
Strand 3	L	84	86	anti-parallel
Strand 4	L	155	156	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	109	116	first strand
Strand 2	M	123	131	anti-parallel
Strand 3	M	82	86	anti-parallel
Strand 4	M	155	158	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	109	116	first strand
Strand 2	N	123	131	anti-parallel
Strand 3	N	81	86	anti-parallel
Strand 4	N	155	158	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	109	116	first strand
Strand 2	O	123	131	anti-parallel
Strand 3	O	81	86	anti-parallel
Strand 4	O	155	158	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	109	116	first strand
Strand 2	P	123	131	anti-parallel
Strand 3	P	82	86	anti-parallel
Strand 4	P	155	158	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	109	116	first strand
Strand 2	Q	123	131	anti-parallel
Strand 3	Q	83	86	anti-parallel
Strand 4	Q	155	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3P5T

Analysis of interatomic Contacts of Structural Units in PDB entry:
3P5T