Analysis of interatomic Contacts of Structural Units in PDB entry:
3P85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P85 entry

There is 1 chain in PDB entry 3P85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ILE 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3P85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
29 46Right-handed alpha
Helix 3
3
A
100 109Right-handed alpha
Helix 4
4
A
134 144Right-handed alpha
Helix 5
5
A
144 155Right-handed alpha
Helix 6
6
A
160 166Right-handed alpha
Helix 7
7
A
174 176Right-handed 310
Helix 8
8
A
177 191Right-handed alpha
Helix 9
9
A
193 231Right-handed alpha
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There are 2 sheets in PDB entry 3P85. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
51 56parallel
Strand 4
A
90 94parallel
Strand 5
A
111 115parallel
Strand 6
A
171 173parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
119 121parallel
Strand 3
A
158 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il