Analysis of interatomic Contacts of Structural Units in PDB entry:
3P86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P86 entry

There are 2 chains in PDB entry 3P86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 544LYS 810
B
 ASP 543LYS 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3P86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
547 549Right-handed 310
Helix 2
2
A
586 603Right-handed alpha
Helix 3
3
A
632 639Right-handed alpha
Helix 4
4
A
641 646Right-handed alpha
Helix 5
5
A
647 667Right-handed alpha
Helix 6
6
A
678 680Right-handed 310
Helix 7
7
A
719 724Right-handed alpha
Helix 8
8
A
731 747Right-handed alpha
Helix 9
9
A
755 766Right-handed alpha
Helix 10
10
A
777 788Right-handed alpha
Helix 11
11
A
791 795Right-handed 310
Helix 12
12
A
797 810Right-handed alpha
Helix 13
13
B
547 549Right-handed 310
Helix 14
14
B
593 602Right-handed alpha
Helix 15
15
B
633 638Right-handed alpha
Helix 16
16
B
641 646Right-handed alpha
Helix 17
17
B
647 667Right-handed alpha
Helix 18
18
B
678 680Right-handed 310
Helix 19
19
B
719 724Right-handed alpha
Helix 20
20
B
731 747Right-handed alpha
Helix 21
21
B
755 765Right-handed alpha
Helix 22
22
B
777 788Right-handed alpha
Helix 23
23
B
791 795Right-handed 310
Helix 24
24
B
797 806Right-handed alpha
Helix 25
25
B
807 809Right-handed 310
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There are 4 sheets in PDB entry 3P86. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 559first strand
Strand 2
A
563 570anti-parallel
Strand 3
A
573 580anti-parallel
Strand 4
A
622 626anti-parallel
Strand 5
A
611 615anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 684first strand
Strand 2
A
690 692anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 558first strand
Strand 2
B
565 570anti-parallel
Strand 3
B
573 579anti-parallel
Strand 4
B
622 626anti-parallel
Strand 5
B
611 615anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
630 632first strand
Strand 2
B
682 684anti-parallel
Strand 3
B
690 692anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il