Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8K entry

There are 2 chains in PDB entry 3P8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -6LYS 261
B
 LEU -6LYS 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3P8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 30Right-handed alpha
Helix 2
2
A
48 50Right-handed 310
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
60 75Right-handed alpha
Helix 5
5
A
118 122Right-handed 310
Helix 6
6
A
147 151Right-handed 310
Helix 7
7
A
152 161Right-handed alpha
Helix 8
8
A
173 175Right-handed 310
Helix 9
9
A
176 192Right-handed alpha
Helix 10
10
A
239 249Right-handed alpha
Helix 11
11
A
250 254Right-handed 310
Helix 12
12
B
14 30Right-handed alpha
Helix 13
13
B
48 50Right-handed 310
Helix 14
14
B
51 56Right-handed alpha
Helix 15
15
B
60 75Right-handed alpha
Helix 16
16
B
118 123Right-handed alpha
Helix 17
17
B
147 151Right-handed 310
Helix 18
18
B
152 161Right-handed alpha
Helix 19
19
B
173 175Right-handed 310
Helix 20
20
B
176 192Right-handed alpha
Helix 21
21
B
239 249Right-handed alpha
Helix 22
22
B
250 254Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3P8K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
77 87parallel
Strand 3
A
90 98anti-parallel
Strand 4
A
104 109anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
77 87parallel
Strand 3
A
36 38parallel
Strand 4
A
0 7parallel
Strand 5
A
231 238anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
140 145anti-parallel
Strand 3
A
165 170parallel
Strand 4
A
194 199parallel
Strand 5
A
214 216anti-parallel
Strand 6
A
222 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
208 210anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
77 87parallel
Strand 3
B
90 98anti-parallel
Strand 4
B
104 109anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
77 87parallel
Strand 3
B
36 38parallel
Strand 4
B
0 7parallel
Strand 5
B
231 238anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
140 145anti-parallel
Strand 3
B
165 170parallel
Strand 4
B
194 199parallel
Strand 5
B
214 216anti-parallel
Strand 6
B
222 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
208 210anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il