Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8L entry

There are 2 chains in PDB entry 3P8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -6ARG 293
B
 SER 0LEU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3P8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 23Right-handed alpha
Helix 2
2
A
26 39Right-handed alpha
Helix 3
3
A
43 56Right-handed alpha
Helix 4
4
A
61 84Right-handed alpha
Helix 5
5
A
98 104Right-handed alpha
Helix 6
6
A
104 125Right-handed alpha
Helix 7
7
A
129 145Right-handed alpha
Helix 8
8
A
148 159Right-handed alpha
Helix 9
9
A
165 177Right-handed alpha
Helix 10
10
A
177 192Right-handed alpha
Helix 11
11
A
195 222Right-handed alpha
Helix 12
12
A
243 249Right-handed alpha
Helix 13
13
A
249 275Right-handed alpha
Helix 14
14
A
280 290Right-handed alpha
Helix 15
15
B
0 23Right-handed alpha
Helix 16
16
B
26 39Right-handed alpha
Helix 17
17
B
43 56Right-handed alpha
Helix 18
18
B
61 84Right-handed alpha
Helix 19
19
B
98 104Right-handed alpha
Helix 20
20
B
104 125Right-handed alpha
Helix 21
21
B
129 145Right-handed alpha
Helix 22
22
B
148 159Right-handed alpha
Helix 23
23
B
165 177Right-handed alpha
Helix 24
24
B
177 192Right-handed alpha
Helix 25
25
B
195 222Right-handed alpha
Helix 26
26
B
243 249Right-handed alpha
Helix 27
27
B
249 275Right-handed alpha
Helix 28
28
B
280 289Right-handed alpha
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There are 2 sheets in PDB entry 3P8L. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 97anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
96 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il