Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8P entry

There are 2 chains in PDB entry 3P8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8LYS 282
B
 ALA 8LYS 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3P8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
39 55Right-handed alpha
Helix 3
3
A
76 79Right-handed 310
Helix 4
4
A
95 100Right-handed 310
Helix 5
5
A
101 112Right-handed alpha
Helix 6
6
A
127 129Right-handed 310
Helix 7
7
A
147 158Right-handed alpha
Helix 8
8
A
173 176Right-handed 310
Helix 9
9
A
191 204Right-handed alpha
Helix 10
10
A
217 221Right-handed 310
Helix 11
11
A
242 251Right-handed alpha
Helix 12
12
A
262 267Right-handed alpha
Helix 13
13
A
272 276Right-handed 310
Helix 14
14
B
24 29Right-handed alpha
Helix 15
15
B
39 56Right-handed alpha
Helix 16
16
B
76 79Right-handed 310
Helix 17
17
B
95 100Right-handed 310
Helix 18
18
B
101 110Right-handed alpha
Helix 19
19
B
111 113Right-handed 310
Helix 20
20
B
127 129Right-handed 310
Helix 21
21
B
147 158Right-handed alpha
Helix 22
22
B
173 176Right-handed 310
Helix 23
23
B
191 205Right-handed alpha
Helix 24
24
B
242 251Right-handed alpha
Helix 25
25
B
262 267Right-handed alpha
Helix 26
26
B
272 276Right-handed 310
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There are 10 sheets in PDB entry 3P8P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
15 19parallel
Strand 3
A
277 279anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
87 90anti-parallel
Strand 3
A
115 118parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
162 167parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
185 189anti-parallel
Strand 3
A
210 214parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 227first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
255 259parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
15 19parallel
Strand 3
B
277 279anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
115 118parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
163 167parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
185 189anti-parallel
Strand 3
B
210 214parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
231 236anti-parallel
Strand 3
B
255 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il