Analysis of interatomic Contacts of Structural Units in PDB entry:
3P8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P8S entry

There are 2 chains in PDB entry 3P8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3LEU 157
B
 ALA 1LEU 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3P8S

There are 5 sheets in PDB entry 3P8S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
10 16anti-parallel
Strand 5
B
126 134anti-parallel
Strand 6
B
89 99anti-parallel
Strand 7
B
102 112anti-parallel
Strand 8
B
116 121anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
35 43anti-parallel
Strand 4
A
76 81anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
102 112anti-parallel
Strand 3
A
89 99anti-parallel
Strand 4
A
126 134anti-parallel
Strand 5
B
10 16anti-parallel
Strand 6
B
148 156anti-parallel
Strand 7
B
136 144anti-parallel
Strand 8
B
26 29anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
68 69anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
35 43anti-parallel
Strand 4
B
76 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il