Analysis of interatomic Contacts of Structural Units in PDB entry:
3P99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P99 entry

There are 3 chains in PDB entry 3P99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 29ARG 476
B
 GLY 29ARG 476
C
 GLY 29PRO 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 3P99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 51Right-handed alpha
Helix 2
2
A
51 62Right-handed alpha
Helix 3
3
A
82 85Right-handed 310
Helix 4
4
A
86 91Right-handed alpha
Helix 5
5
A
99 103Right-handed alpha
Helix 6
6
A
106 111Right-handed alpha
Helix 7
7
A
114 118Right-handed 310
Helix 8
8
A
119 132Right-handed alpha
Helix 9
9
A
137 140Right-handed 310
Helix 10
10
A
141 157Right-handed alpha
Helix 11
11
A
167 184Right-handed alpha
Helix 12
12
A
185 192Right-handed alpha
Helix 13
13
A
194 207Right-handed alpha
Helix 14
14
A
208 214Right-handed 310
Helix 15
15
A
215 220Right-handed 310
Helix 16
16
A
223 254Right-handed alpha
Helix 17
17
A
260 267Right-handed alpha
Helix 18
18
A
277 309Right-handed alpha
Helix 19
19
A
312 323Right-handed alpha
Helix 20
20
A
331 338Right-handed alpha
Helix 21
21
A
341 353Right-handed alpha
Helix 22
22
A
383 388Right-handed alpha
Helix 23
23
A
417 421Right-handed 310
Helix 24
24
A
424 440Right-handed alpha
Helix 25
25
A
466 468Right-handed 310
Helix 26
26
B
44 51Right-handed alpha
Helix 27
27
B
51 63Right-handed alpha
Helix 28
28
B
82 84Right-handed 310
Helix 29
29
B
85 91Right-handed alpha
Helix 30
30
B
99 104Right-handed alpha
Helix 31
31
B
106 111Right-handed alpha
Helix 32
32
B
114 118Right-handed 310
Helix 33
33
B
119 132Right-handed alpha
Helix 34
34
B
135 155Right-handed alpha
Helix 35
35
B
166 184Right-handed alpha
Helix 36
36
B
185 190Right-handed alpha
Helix 37
37
B
196 206Right-handed alpha
Helix 38
38
B
207 208Right-handed 310
Helix 39
39
B
209 214Right-handed 310
Helix 40
40
B
215 220Right-handed 310
Helix 41
41
B
225 233Right-handed alpha
Helix 42
42
B
234 237Right-handed 310
Helix 43
43
B
240 245Right-handed alpha
Helix 44
44
B
245 254Right-handed alpha
Helix 45
45
B
260 267Right-handed alpha
Helix 46
46
B
277 309Right-handed alpha
Helix 47
47
B
310 312Right-handed 310
Helix 48
48
B
313 324Right-handed alpha
Helix 49
49
B
331 337Right-handed alpha
Helix 50
50
B
340 353Right-handed alpha
Helix 51
51
B
383 388Right-handed alpha
Helix 52
52
B
417 421Right-handed 310
Helix 53
53
B
424 439Right-handed alpha
Helix 54
54
B
465 469Right-handed 310
Helix 55
55
C
44 51Right-handed alpha
Helix 56
56
C
51 63Right-handed alpha
Helix 57
57
C
82 84Right-handed 310
Helix 58
58
C
85 91Right-handed alpha
Helix 59
59
C
103 105Right-handed 310
Helix 60
60
C
106 111Right-handed alpha
Helix 61
61
C
119 133Right-handed alpha
Helix 62
62
C
134 137Right-handed 310
Helix 63
63
C
138 158Right-handed alpha
Helix 64
64
C
167 184Right-handed alpha
Helix 65
65
C
185 192Right-handed alpha
Helix 66
66
C
193 208Right-handed alpha
Helix 67
67
C
209 214Right-handed 310
Helix 68
68
C
215 220Right-handed 310
Helix 69
69
C
223 252Right-handed alpha
Helix 70
70
C
260 268Right-handed alpha
Helix 71
71
C
277 309Right-handed alpha
Helix 72
72
C
312 323Right-handed alpha
Helix 73
73
C
331 338Right-handed alpha
Helix 74
74
C
339 353Right-handed alpha
Helix 75
75
C
383 388Right-handed alpha
Helix 76
76
C
417 421Right-handed 310
Helix 77
77
C
424 440Right-handed alpha
Helix 78
78
C
466 468Right-handed 310
Helix 79
79
D
44 51Right-handed alpha
Helix 80
80
D
51 63Right-handed alpha
Helix 81
81
D
82 84Right-handed 310
Helix 82
82
D
85 91Right-handed alpha
Helix 83
83
D
99 104Right-handed alpha
Helix 84
84
D
105 107Right-handed 310
Helix 85
85
D
114 118Right-handed 310
Helix 86
86
D
119 131Right-handed alpha
Helix 87
87
D
135 137Right-handed 310
Helix 88
88
D
138 159Right-handed alpha
Helix 89
89
D
167 184Right-handed alpha
Helix 90
90
D
185 192Right-handed alpha
Helix 91
91
D
193 206Right-handed alpha
Helix 92
92
D
207 208Right-handed 310
Helix 93
93
D
209 214Right-handed 310
Helix 94
94
D
215 220Right-handed 310
Helix 95
95
D
223 251Right-handed alpha
Helix 96
96
D
260 267Right-handed alpha
Helix 97
97
D
277 308Right-handed alpha
Helix 98
98
D
309 311Right-handed 310
Helix 99
99
D
312 321Right-handed alpha
Helix 100
100
D
331 337Right-handed alpha
Helix 101
101
D
339 353Right-handed alpha
Helix 102
102
D
383 388Right-handed alpha
Helix 103
103
D
417 421Right-handed 310
Helix 104
104
D
424 442Right-handed alpha
Helix 105
105
D
466 468Right-handed 310
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There are 13 sheets in PDB entry 3P99. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
75 80anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
97 98anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
443 447anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
372 374anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 72first strand
Strand 2
B
75 80anti-parallel
Strand 3
B
379 382parallel
Strand 4
B
359 363anti-parallel
Strand 5
B
97 98anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
471 475anti-parallel
Strand 3
B
443 447anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
B
372 374anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 72first strand
Strand 2
C
75 80anti-parallel
Strand 3
C
379 382parallel
Strand 4
C
359 363anti-parallel
Strand 5
C
97 98anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 166first strand
Strand 2
C
470 474anti-parallel
Strand 3
C
444 447anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
367 369first strand
Strand 2
C
372 374anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
455 456first strand
Strand 2
C
463 464anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 72first strand
Strand 2
D
75 80anti-parallel
Strand 3
D
379 382parallel
Strand 4
D
359 363anti-parallel
Strand 5
D
97 98anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 166first strand
Strand 2
D
470 475anti-parallel
Strand 3
D
443 447anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
367 369first strand
Strand 2
D
372 374anti-parallel
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