Analysis of interatomic Contacts of Structural Units in PDB entry:
3P9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3P9Y entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 3P9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2TYR 195
B
 GLY -2TYR 195
C
 ASP 3TYR 195
D
 SER 5TYR 195
E
 THR 4THR 4
E
 PRO 6TYR 8
F
 THR 4THR 4
F
 PRO 6TYR 8
G
 THR 4THR 4
G
 PRO 6TYR 8
H
 THR 4THR 4
H
 PRO 6TYR 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3P9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 30Right-handed alpha
Helix 2
2
A
61 80Right-handed alpha
Helix 3
3
A
81 93Right-handed alpha
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
113 126Right-handed alpha
Helix 6
6
A
145 165Right-handed alpha
Helix 7
7
A
168 185Right-handed alpha
Helix 8
8
B
18 30Right-handed alpha
Helix 9
9
B
61 74Right-handed alpha
Helix 10
10
B
75 80Right-handed alpha
Helix 11
11
B
81 93Right-handed alpha
Helix 12
12
B
98 102Right-handed 310
Helix 13
13
B
113 127Right-handed alpha
Helix 14
14
B
145 165Right-handed alpha
Helix 15
15
B
168 185Right-handed alpha
Helix 16
16
C
18 30Right-handed alpha
Helix 17
17
C
61 80Right-handed alpha
Helix 18
18
C
81 93Right-handed alpha
Helix 19
19
C
98 102Right-handed 310
Helix 20
20
C
113 127Right-handed alpha
Helix 21
21
C
145 165Right-handed alpha
Helix 22
22
C
168 185Right-handed alpha
Helix 23
23
D
18 31Right-handed alpha
Helix 24
24
D
61 80Right-handed alpha
Helix 25
25
D
81 91Right-handed alpha
Helix 26
26
D
98 102Right-handed 310
Helix 27
27
D
113 127Right-handed alpha
Helix 28
28
D
145 165Right-handed alpha
Helix 29
29
D
168 185Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3P9Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
8 13parallel
Strand 3
A
108 111parallel
Strand 4
A
134 139parallel
Strand 5
A
189 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
8 13parallel
Strand 3
B
108 111parallel
Strand 4
B
134 139parallel
Strand 5
B
189 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 49first strand
Strand 2
B
52 56anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 38first strand
Strand 2
C
8 13parallel
Strand 3
C
108 111parallel
Strand 4
C
134 139parallel
Strand 5
C
189 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 45first strand
Strand 2
C
54 56anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 38first strand
Strand 2
D
8 13parallel
Strand 3
D
108 111parallel
Strand 4
D
134 139parallel
Strand 5
D
189 194anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 49first strand
Strand 2
D
52 56anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il