Analysis of interatomic Contacts of Structural Units in PDB entry:
3PAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PAM entry

There are 2 chains in PDB entry 3PAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 319SER 574
B
 ASP 319SER 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3PAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
329 333Right-handed 310
Helix 2
2
A
334 345Right-handed alpha
Helix 3
3
A
346 354Right-handed alpha
Helix 4
4
A
379 387Right-handed alpha
Helix 5
5
A
394 399Right-handed alpha
Helix 6
6
A
413 427Right-handed alpha
Helix 7
7
A
452 468Right-handed alpha
Helix 8
8
A
479 490Right-handed alpha
Helix 9
9
A
507 514Right-handed alpha
Helix 10
10
A
515 520Right-handed 310
Helix 11
11
A
531 544Right-handed alpha
Helix 12
12
A
546 565Right-handed alpha
Helix 13
13
B
329 333Right-handed 310
Helix 14
14
B
334 345Right-handed alpha
Helix 15
15
B
346 354Right-handed alpha
Helix 16
16
B
379 387Right-handed alpha
Helix 17
17
B
394 400Right-handed alpha
Helix 18
18
B
413 427Right-handed alpha
Helix 19
19
B
452 468Right-handed alpha
Helix 20
20
B
479 490Right-handed alpha
Helix 21
21
B
508 514Right-handed alpha
Helix 22
22
B
514 519Right-handed alpha
Helix 23
23
B
531 544Right-handed alpha
Helix 24
24
B
546 565Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3PAM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
320 325anti-parallel
Strand 3
A
494 499anti-parallel
Strand 4
A
445 450parallel
Strand 5
A
472 477parallel
Strand 6
B
430 432anti-parallel
Strand 7
B
435 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
571 572anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
435 437anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 499first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
567 569anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
571 572anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 450first strand
Strand 2
B
472 477parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il