Analysis of interatomic Contacts of Structural Units in PDB entry:
3PB0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3PB0 entry

There are 4 chains in PDB entry 3PB0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -5	LEU 294
B	GLY -5	LEU 294
C	GLY -5	LEU 294
D	GLY -5	LEU 294

There are 63 helices in PDB entry 3PB0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	-4	1	Right-handed 310
Helix 2	2	A	19	33	Right-handed alpha
Helix 3	3	A	42	50	Right-handed 310
Helix 4	4	A	51	67	Right-handed alpha
Helix 5	5	A	80	95	Right-handed alpha
Helix 6	6	A	110	124	Right-handed alpha
Helix 7	7	A	134	139	Right-handed alpha
Helix 8	8	A	143	154	Right-handed alpha
Helix 9	9	A	166	181	Right-handed alpha
Helix 10	10	A	190	192	Right-handed 310
Helix 11	11	A	193	200	Right-handed alpha
Helix 12	12	A	208	212	Right-handed 310
Helix 13	13	A	213	225	Right-handed alpha
Helix 14	14	A	228	246	Right-handed alpha
Helix 15	15	A	252	262	Right-handed alpha
Helix 16	16	A	277	291	Right-handed alpha
Helix 17	17	B	-3	1	Right-handed 310
Helix 18	18	B	19	33	Right-handed alpha
Helix 19	19	B	42	50	Right-handed 310
Helix 20	20	B	51	67	Right-handed alpha
Helix 21	21	B	80	95	Right-handed alpha
Helix 22	22	B	110	123	Right-handed alpha
Helix 23	23	B	134	139	Right-handed alpha
Helix 24	24	B	143	154	Right-handed alpha
Helix 25	25	B	166	181	Right-handed alpha
Helix 26	26	B	190	192	Right-handed 310
Helix 27	27	B	193	200	Right-handed alpha
Helix 28	28	B	208	212	Right-handed 310
Helix 29	29	B	213	227	Right-handed alpha
Helix 30	30	B	228	246	Right-handed alpha
Helix 31	31	B	252	262	Right-handed alpha
Helix 32	32	B	277	291	Right-handed alpha
Helix 33	33	C	-4	1	Right-handed 310
Helix 34	34	C	19	32	Right-handed alpha
Helix 35	35	C	42	50	Right-handed 310
Helix 36	36	C	51	67	Right-handed alpha
Helix 37	37	C	80	95	Right-handed alpha
Helix 38	38	C	110	124	Right-handed alpha
Helix 39	39	C	134	139	Right-handed alpha
Helix 40	40	C	143	154	Right-handed alpha
Helix 41	41	C	166	181	Right-handed alpha
Helix 42	42	C	190	192	Right-handed 310
Helix 43	43	C	193	200	Right-handed alpha
Helix 44	44	C	208	212	Right-handed 310
Helix 45	45	C	213	226	Right-handed alpha
Helix 46	46	C	228	246	Right-handed alpha
Helix 47	47	C	252	262	Right-handed alpha
Helix 48	48	C	277	291	Right-handed alpha
Helix 49	49	D	19	32	Right-handed alpha
Helix 50	50	D	46	50	Right-handed 310
Helix 51	51	D	51	67	Right-handed alpha
Helix 52	52	D	80	94	Right-handed alpha
Helix 53	53	D	110	123	Right-handed alpha
Helix 54	54	D	134	139	Right-handed alpha
Helix 55	55	D	143	154	Right-handed alpha
Helix 56	56	D	166	181	Right-handed alpha
Helix 57	57	D	190	192	Right-handed 310
Helix 58	58	D	193	200	Right-handed alpha
Helix 59	59	D	208	212	Right-handed 310
Helix 60	60	D	213	227	Right-handed alpha
Helix 61	61	D	228	246	Right-handed alpha
Helix 62	62	D	252	262	Right-handed alpha
Helix 63	63	D	277	291	Right-handed alpha

There are 8 sheets in PDB entry 3PB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	37	40	parallel
Strand 3	A	72	75	parallel
Strand 4	A	98	102	parallel
Strand 5	A	128	133	parallel
Strand 6	A	157	162	parallel
Strand 7	A	185	188	parallel
Strand 8	A	204	207	parallel
Strand 9	A	4	8	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	17	18	anti-parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	37	40	parallel
Strand 3	B	72	75	parallel
Strand 4	B	98	102	parallel
Strand 5	B	128	133	parallel
Strand 6	B	157	162	parallel
Strand 7	B	185	188	parallel
Strand 8	B	204	207	parallel
Strand 9	B	4	8	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	17	18	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	9	first strand
Strand 2	C	37	40	parallel
Strand 3	C	72	75	parallel
Strand 4	C	98	102	parallel
Strand 5	C	128	133	parallel
Strand 6	C	157	162	parallel
Strand 7	C	185	188	parallel
Strand 8	C	204	207	parallel
Strand 9	C	4	9	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	17	18	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	9	first strand
Strand 2	D	37	40	parallel
Strand 3	D	72	75	parallel
Strand 4	D	98	102	parallel
Strand 5	D	128	133	parallel
Strand 6	D	157	162	parallel
Strand 7	D	185	188	parallel
Strand 8	D	204	207	parallel
Strand 9	D	4	9	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3PB0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3PB0