Analysis of interatomic Contacts of Structural Units in PDB entry:
3PB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PB2 entry

There are 6 chains in PDB entry 3PB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -5LEU 294
B
 ASP -3LEU 294
C
 PRO -2LEU 294
D
 ASP -3LEU 294
E
 PHE -1LEU 294
F
 THR 0LEU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 3PB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 1Right-handed 310
Helix 2
2
A
19 32Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
51 67Right-handed alpha
Helix 5
5
A
80 95Right-handed alpha
Helix 6
6
A
110 123Right-handed alpha
Helix 7
7
A
134 139Right-handed alpha
Helix 8
8
A
143 154Right-handed alpha
Helix 9
9
A
166 181Right-handed alpha
Helix 10
10
A
190 192Right-handed 310
Helix 11
11
A
193 200Right-handed alpha
Helix 12
12
A
208 212Right-handed 310
Helix 13
13
A
213 226Right-handed alpha
Helix 14
14
A
228 246Right-handed alpha
Helix 15
15
A
252 262Right-handed alpha
Helix 16
16
A
277 291Right-handed alpha
Helix 17
17
B
-3 1Right-handed 310
Helix 18
18
B
19 33Right-handed alpha
Helix 19
19
B
42 50Right-handed 310
Helix 20
20
B
51 67Right-handed alpha
Helix 21
21
B
80 95Right-handed alpha
Helix 22
22
B
110 123Right-handed alpha
Helix 23
23
B
134 139Right-handed alpha
Helix 24
24
B
143 154Right-handed alpha
Helix 25
25
B
166 181Right-handed alpha
Helix 26
26
B
190 192Right-handed 310
Helix 27
27
B
193 200Right-handed alpha
Helix 28
28
B
208 212Right-handed 310
Helix 29
29
B
213 226Right-handed alpha
Helix 30
30
B
228 246Right-handed alpha
Helix 31
31
B
252 262Right-handed alpha
Helix 32
32
B
277 291Right-handed alpha
Helix 33
33
C
19 33Right-handed alpha
Helix 34
34
C
42 50Right-handed 310
Helix 35
35
C
51 67Right-handed alpha
Helix 36
36
C
80 95Right-handed alpha
Helix 37
37
C
110 123Right-handed alpha
Helix 38
38
C
134 139Right-handed alpha
Helix 39
39
C
143 154Right-handed alpha
Helix 40
40
C
166 181Right-handed alpha
Helix 41
41
C
190 192Right-handed 310
Helix 42
42
C
193 201Right-handed alpha
Helix 43
43
C
208 212Right-handed 310
Helix 44
44
C
213 226Right-handed alpha
Helix 45
45
C
228 246Right-handed alpha
Helix 46
46
C
252 262Right-handed alpha
Helix 47
47
C
277 291Right-handed alpha
Helix 48
48
D
-3 1Right-handed 310
Helix 49
49
D
19 33Right-handed alpha
Helix 50
50
D
42 50Right-handed 310
Helix 51
51
D
51 67Right-handed alpha
Helix 52
52
D
80 95Right-handed alpha
Helix 53
53
D
110 123Right-handed alpha
Helix 54
54
D
134 139Right-handed alpha
Helix 55
55
D
143 154Right-handed alpha
Helix 56
56
D
166 181Right-handed alpha
Helix 57
57
D
190 192Right-handed 310
Helix 58
58
D
193 200Right-handed alpha
Helix 59
59
D
208 212Right-handed 310
Helix 60
60
D
213 227Right-handed alpha
Helix 61
61
D
228 246Right-handed alpha
Helix 62
62
D
252 262Right-handed alpha
Helix 63
63
D
277 291Right-handed alpha
Helix 64
64
E
19 33Right-handed alpha
Helix 65
65
E
46 50Right-handed 310
Helix 66
66
E
51 67Right-handed alpha
Helix 67
67
E
80 95Right-handed alpha
Helix 68
68
E
110 123Right-handed alpha
Helix 69
69
E
134 139Right-handed alpha
Helix 70
70
E
143 154Right-handed alpha
Helix 71
71
E
166 181Right-handed alpha
Helix 72
72
E
190 192Right-handed 310
Helix 73
73
E
193 200Right-handed alpha
Helix 74
74
E
208 212Right-handed 310
Helix 75
75
E
213 227Right-handed alpha
Helix 76
76
E
228 246Right-handed alpha
Helix 77
77
E
252 262Right-handed alpha
Helix 78
78
E
277 291Right-handed alpha
Helix 79
79
F
19 33Right-handed alpha
Helix 80
80
F
42 50Right-handed 310
Helix 81
81
F
51 67Right-handed alpha
Helix 82
82
F
80 94Right-handed alpha
Helix 83
83
F
110 123Right-handed alpha
Helix 84
84
F
134 139Right-handed alpha
Helix 85
85
F
143 154Right-handed alpha
Helix 86
86
F
166 181Right-handed alpha
Helix 87
87
F
190 192Right-handed 310
Helix 88
88
F
193 200Right-handed alpha
Helix 89
89
F
208 212Right-handed 310
Helix 90
90
F
213 226Right-handed alpha
Helix 91
91
F
228 246Right-handed alpha
Helix 92
92
F
252 262Right-handed alpha
Helix 93
93
F
277 292Right-handed alpha
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There are 12 sheets in PDB entry 3PB2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
37 40parallel
Strand 3
A
72 75parallel
Strand 4
A
98 102parallel
Strand 5
A
128 133parallel
Strand 6
A
157 162parallel
Strand 7
A
185 188parallel
Strand 8
A
204 207parallel
Strand 9
A
4 8parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
17 18anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
37 40parallel
Strand 3
B
72 75parallel
Strand 4
B
98 102parallel
Strand 5
B
128 133parallel
Strand 6
B
157 162parallel
Strand 7
B
185 188parallel
Strand 8
B
204 207parallel
Strand 9
B
4 8parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
17 18anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
37 40parallel
Strand 3
C
72 75parallel
Strand 4
C
98 102parallel
Strand 5
C
128 133parallel
Strand 6
C
157 162parallel
Strand 7
C
185 188parallel
Strand 8
C
204 207parallel
Strand 9
C
4 8parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
17 18anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 8first strand
Strand 2
D
37 40parallel
Strand 3
D
72 75parallel
Strand 4
D
98 102parallel
Strand 5
D
128 133parallel
Strand 6
D
157 162parallel
Strand 7
D
185 188parallel
Strand 8
D
204 207parallel
Strand 9
D
4 8parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 14first strand
Strand 2
D
17 18anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 8first strand
Strand 2
E
37 40parallel
Strand 3
E
72 75parallel
Strand 4
E
98 102parallel
Strand 5
E
128 133parallel
Strand 6
E
157 162parallel
Strand 7
E
185 188parallel
Strand 8
E
204 207parallel
Strand 9
E
4 8parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 14first strand
Strand 2
E
17 18anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 8first strand
Strand 2
F
37 40parallel
Strand 3
F
72 75parallel
Strand 4
F
98 102parallel
Strand 5
F
128 133parallel
Strand 6
F
157 162parallel
Strand 7
F
185 188parallel
Strand 8
F
204 207parallel
Strand 9
F
4 8parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
13 14first strand
Strand 2
F
17 18anti-parallel
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