Analysis of interatomic Contacts of Structural Units in PDB entry:
3PB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PB8 entry

There is 1 chain in PDB entry 3PB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 VAL 70LEU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3PB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
77 87Right-handed alpha
Helix 2
2
X
89 97Right-handed alpha
Helix 3
3
X
98 102Right-handed 310
Helix 4
4
X
109 126Right-handed alpha
Helix 5
5
X
187 201Right-handed alpha
Helix 6
6
X
201 211Right-handed alpha
Helix 7
7
X
237 250Right-handed alpha
Helix 8
8
X
257 260Right-handed 310
Helix 9
9
X
282 284Right-handed 310
Helix 10
10
X
285 302Right-handed alpha
Helix 11
11
X
328 333Right-handed alpha
Helix 12
12
X
356 360Right-handed 310
Helix 13
13
X
361 381Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3PB8.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
131 141first strand
Strand 2
X
144 154anti-parallel
Strand 3
X
215 222anti-parallel
Strand 4
X
161 168parallel
Strand 5
X
262 269parallel
Strand 6
X
338 342parallel
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