Analysis of interatomic Contacts of Structural Units in PDB entry:
3PBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3PBL entry

There are 2 chains in PDB entry 3PBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 32CYS 400
B
 TYR 32CYS 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3PBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 57Right-handed alpha
Helix 2
2
A
62 82Right-handed alpha
Helix 3
3
A
82 92Right-handed alpha
Helix 4
4
A
99 134Right-handed alpha
Helix 5
5
A
134 141Right-handed alpha
Helix 6
6
A
146 170Right-handed alpha
Helix 7
7
A
185 197Right-handed alpha
Helix 8
8
A
197 217Right-handed alpha
Helix 9
9
A
1002 1012Right-handed alpha
Helix 10
10
A
1038 1051Right-handed alpha
Helix 11
11
A
1059 1081Right-handed alpha
Helix 12
12
A
1084 1090Right-handed alpha
Helix 13
13
A
1092 1112Right-handed alpha
Helix 14
14
A
1114 1123Right-handed alpha
Helix 15
15
A
1125 1135Right-handed alpha
Helix 16
16
A
1136 1142Right-handed alpha
Helix 17
17
A
1142 1156Right-handed alpha
Helix 18
18
A
321 354Right-handed alpha
Helix 19
19
A
361 387Right-handed alpha
Helix 20
20
A
387 399Right-handed alpha
Helix 21
21
B
34 55Right-handed alpha
Helix 22
22
B
57 61Right-handed 310
Helix 23
23
B
64 82Right-handed alpha
Helix 24
24
B
82 92Right-handed alpha
Helix 25
25
B
99 134Right-handed alpha
Helix 26
26
B
145 166Right-handed alpha
Helix 27
27
B
167 171Right-handed 310
Helix 28
28
B
185 196Right-handed alpha
Helix 29
29
B
197 219Right-handed alpha
Helix 30
30
B
1002 1012Right-handed alpha
Helix 31
31
B
1038 1051Right-handed alpha
Helix 32
32
B
1059 1081Right-handed alpha
Helix 33
33
B
1084 1091Right-handed alpha
Helix 34
34
B
1092 1107Right-handed alpha
Helix 35
35
B
1107 1112Right-handed alpha
Helix 36
36
B
1114 1123Right-handed alpha
Helix 37
37
B
1125 1133Right-handed alpha
Helix 38
38
B
1136 1142Right-handed alpha
Helix 39
39
B
1142 1156Right-handed alpha
Helix 40
40
B
321 355Right-handed alpha
Helix 41
41
B
361 387Right-handed alpha
Helix 42
42
B
387 398Right-handed alpha
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There are 2 sheets in PDB entry 3PBL. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1019first strand
Strand 2
A
1025 1027anti-parallel
Strand 3
A
1031 1034anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1014 1019first strand
Strand 2
B
1025 1028anti-parallel
Strand 3
B
1031 1034anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il